Detailed information of component protein


Summary

Component ID T6CP002339
Component protein type TssF
T6SS ID (Type) T6SS00234 insolico (Type i3)
Strain Serratia proteamaculans 568
Replicon chromosome
Sequence Protein sequence (629 a.a.); Nucleotide sequence (1887 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SPRO_RS15410
Coordinate (Strand) 3311175..3313061 (+)
NCBI ID WP_012145733.1
RefSeq NC_009832
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.1e-227 1..625
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 629 a.a.    

>T6CP002339 NC_009832:3311175-3313061 [Serratia proteamaculans 568] [TssF]
MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEIIY
PNYLSPTPSMAIAELQPDSNKGDISNGFVVPRGTMMDSQSLKKSGITCSYTTAHDVTLQPVRLKSVELGGIPADIPLAAL
GLQHSGCVSALRIRLECYDSVTLNNLQLDQLMFYLSGPDLQAQQLLELLMQHSVGLICQTVEAQPQRRVLALDELRQEGF
AADQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGIRPLLQSVREGKKTLRQFEILVLLDRQDAALERVIDVAHLALH
CTPVINLFPKVAERITVSEKSHEYHLVVDNIRPLDYEVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRRE
QRTLSEHARRYGTRTGYVGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVSLKKG
PTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAITKQIQGVRHCNLRPVYRRVPEPGPI
VFARGIAIDLTVDEQSFSGSSPYLLGSVLERLFSRLVAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI*

  Nucleotide sequence: 1887 bp    

>T6CP002339 NC_009832:3311175-3313061 [Serratia proteamaculans 568] [TssF]
ATGGACAGTAAACTTTTAGACTATTACAACCGCGAGCTGGCCTATCTGCGTGAGATGGGCGCAGAGTTCGCCGAGCAATA
TCCCAAAGTGGCAGGCCGCCTTGGCATGCGCGGTATCGACGTAGCGGATCCTTATATCGAGCGTCTGATGGAAGGCTTTG
CCTTTCTCACCTCGCGCGTACAACTGAAGATGGACGCAGAGTTTCCACGTTTCTCCCAGCGTCTGCTGGAGATCATCTAC
CCCAACTATCTGTCGCCAACGCCATCGATGGCGATTGCCGAGCTGCAACCCGACAGCAACAAGGGCGATATCAGCAACGG
CTTTGTCGTGCCACGCGGCACCATGATGGACAGCCAGTCGCTGAAAAAGAGTGGCATCACCTGCAGCTACACCACCGCGC
ACGACGTCACGCTGCAGCCGGTGCGGCTGAAAAGCGTCGAACTGGGCGGCATTCCGGCCGATATTCCACTGGCCGCTCTG
GGGTTGCAGCACAGTGGCTGCGTCAGCGCGCTGCGCATCCGGCTGGAGTGCTATGACAGCGTCACGCTCAACAACCTGCA
GTTGGACCAGTTGATGTTTTATCTCTCCGGCCCGGACTTGCAGGCACAGCAACTGCTGGAACTGCTGATGCAGCACAGCG
TCGGGCTGATTTGCCAGACGGTGGAAGCGCAACCGCAGCGGCGGGTGCTGGCACTGGACGAGTTGCGACAGGAAGGCTTC
GCCGCCGATCAGGCACTGCTGCCGAACGATCTGCGCAATTTTGAAGGCTATCGCCTGCTGCAGGAGTATTTTGCCTTTCC
GGCGCGCTTTCAGTTCTTCAGCGTCAATGGCATACGCCCACTGTTGCAAAGCGTACGCGAAGGCAAAAAAACGCTGCGGC
AGTTTGAGATCCTGGTGCTGCTTGACCGTCAGGATGCGGCACTGGAGCGGGTAATCGACGTCGCCCATTTGGCGTTGCAC
TGCACGCCGGTGATTAATCTGTTCCCCAAGGTCGCCGAACGCATCACGGTCAGCGAAAAAAGCCATGAATATCATCTGGT
GGTCGATAACATTCGTCCGCTTGATTATGAGGTGTTCTCTGTTCAGCGGCTCGGTGGCAGCGCCAGCGAAAAACGCTATG
AGCAGGAATTCCGGCCGTTTTACAGCACCCTGAGCGCGGATGACGGCAACTACGGCGCCTACTTTTCACTGCGGCGCGAA
CAGCGCACGTTGTCCGAACACGCCCGTCGCTACGGCACCCGCACCGGCTATGTCGGCTCGGAAGTGTTCGTCTCGCTGGT
GGATGAACGGCAGTCGCCGTGGCACAGCGACCTGAAATACCTCACCGCCGACGTGCTGTGTACCAGTCGCGATCTGCCGC
TGATGCTGTTGCAGCAGGATCAGGGCAATTTCGTGATGCCGGACTCGATCCCGATCAAACAGGTGTCGCTGAAAAAAGGC
CCGACGCCGCCGCGCCCGGCGCTGGCCGAAGGCATGATCACCTGGCGGCTGATCAGCCAACTGCAATTGAACTACCTCAG
CATGATGGACGGCGACCCGGAACAGGGGGCTGCCAGCCTGCGTCAGCTGCTCGGCCTGTACGGCAACCTGAGCGAGCCGG
CGATCACCAAGCAGATCCAGGGTGTTCGCCACTGTAACCTGCGCCCGGTATACCGCCGGGTACCCGAGCCGGGGCCGATC
GTGTTTGCCCGCGGTATCGCCATCGACCTGACCGTGGATGAACAGTCATTCTCCGGCAGCAGCCCCTACCTGCTGGGTAG
CGTTCTGGAGCGTTTGTTCTCCCGGCTGGTAGCGATGAACACCTTTACCGAAATGACGCTTTCCAGCCAGCAGCGCGGTG
AGATTGCGCACTGGCAGGCGCGCATGGGCAAAAGGACGCTGATTTGA