Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   V9W60_RS11465 Genome accession   NZ_CP146759
Coordinates   2247119..2247412 (-) Length   97 a.a.
NCBI ID   WP_024718841.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ61     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2242119..2252412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS11415 (V9W60_11415) sinR 2242277..2242612 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  V9W60_RS11420 (V9W60_11420) - 2242680..2243480 (-) 801 WP_335364407.1 TasA family protein -
  V9W60_RS11425 (V9W60_11425) - 2243539..2244111 (-) 573 WP_017357979.1 signal peptidase I -
  V9W60_RS11430 (V9W60_11430) tapA 2244161..2244688 (-) 528 WP_268432013.1 amyloid fiber anchoring/assembly protein TapA -
  V9W60_RS11435 (V9W60_11435) - 2244959..2245273 (+) 315 WP_234898394.1 DUF3889 domain-containing protein -
  V9W60_RS11440 (V9W60_11440) - 2245308..2245502 (-) 195 WP_008342191.1 YqzE family protein -
  V9W60_RS11445 (V9W60_11445) comGG 2245563..2245946 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  V9W60_RS11450 (V9W60_11450) comGF 2245943..2246440 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  V9W60_RS11455 (V9W60_11455) comGE 2246382..2246696 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  V9W60_RS11460 (V9W60_11460) comGD 2246680..2247126 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  V9W60_RS11465 (V9W60_11465) comGC 2247119..2247412 (-) 294 WP_024718841.1 competence type IV pilus major pilin ComGC Machinery gene
  V9W60_RS11470 (V9W60_11470) comGB 2247429..2248469 (-) 1041 WP_335364405.1 competence type IV pilus assembly protein ComGB -
  V9W60_RS11475 (V9W60_11475) comGA 2248450..2249520 (-) 1071 WP_338703651.1 competence type IV pilus ATPase ComGA Machinery gene
  V9W60_RS11480 (V9W60_11480) - 2249979..2250851 (-) 873 WP_024718838.1 STAS domain-containing protein -
  V9W60_RS11490 (V9W60_11490) - 2251077..2251457 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V9W60_RS11495 (V9W60_11495) - 2251670..2251912 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10714.59 Da        Isoelectric Point: 6.7081

>NTDB_id=944245 V9W60_RS11465 WP_024718841.1 2247119..2247412(-) (comGC) [Bacillus altitudinis strain JJ61]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLS
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=944245 V9W60_RS11465 WP_024718841.1 2247119..2247412(-) (comGC) [Bacillus altitudinis strain JJ61]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTATCT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381