Detailed information NTG0877990

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: RIM75_RS08960
• Genome accession: NZ_CP133957
• Coordinates: 1880652..1881587 (-)
• Length: 311 a.a.
• NCBI ID: WP_317582818.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain HT1112
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1875652..1886587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM75_RS08935 (RIM75_08935)	tsaD	1875691..1876707 (-)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
RIM75_RS08940 (RIM75_08940)	rimI	1876697..1877122 (-)	426	WP_317582817.1	ribosomal protein S18-alanine N-acetyltransferase	-
RIM75_RS08945 (RIM75_08945)	tsaB	1877125..1877823 (-)	699	WP_012679000.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
RIM75_RS08950 (RIM75_08950)	-	1878109..1878339 (+)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
RIM75_RS08955 (RIM75_08955)	rnjA	1878341..1880023 (+)	1683	WP_012514941.1	ribonuclease J1	-
RIM75_RS08960 (RIM75_08960)	amiF	1880652..1881587 (-)	936	WP_317582818.1	ATP-binding cassette domain-containing protein	Regulator
RIM75_RS08965 (RIM75_08965)	oppD	1881587..1882633 (-)	1047	WP_111689823.1	ABC transporter ATP-binding protein	Regulator
RIM75_RS08970 (RIM75_08970)	-	1882645..1883676 (-)	1032	WP_012678997.1	ABC transporter permease	-
RIM75_RS08975 (RIM75_08975)	-	1883686..1884600 (-)	915	WP_012678996.1	ABC transporter permease	-
RIM75_RS08980 (RIM75_08980)	-	1884769..1886427 (-)	1659	WP_317582819.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34972.18 Da
• Isoelectric Point: 9.0813

>NTDB_id=877990 RIM75_RS08960 WP_317582818.1 1880652..1881587(-) (amiF) [Streptococcus equi subsp. equi strain HT1112]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAKREARVQELLKLVGLNQNHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAECGL

Nucleotide

• Length: 936 bp

>NTDB_id=877990 RIM75_RS08960 WP_317582818.1 1880652..1881587(-) (amiF) [Streptococcus equi subsp. equi strain HT1112]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTTTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAAAGCGTGAAGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGAACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGAATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGTGTGGCCTTTAA

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.426	98.071	0.534
amiF	Streptococcus thermophilus LMG 18311	54.098	98.071	0.531
amiF	Streptococcus salivarius strain HSISS4	54.098	98.071	0.531