Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RIM75_RS08720 Genome accession   NZ_CP133957
Coordinates   1831971..1832459 (-) Length   162 a.a.
NCBI ID   WP_012679031.1    Uniprot ID   C0MB80
Organism   Streptococcus equi subsp. equi strain HT1112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1826971..1837459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM75_RS08695 (RIM75_08695) - 1828020..1828964 (+) 945 WP_012678501.1 magnesium transporter CorA family protein -
  RIM75_RS08700 (RIM75_08700) - 1828989..1829126 (-) 138 WP_154235407.1 hypothetical protein -
  RIM75_RS08705 (RIM75_08705) - 1829223..1829873 (+) 651 WP_012679033.1 DUF1129 domain-containing protein -
  RIM75_RS08715 (RIM75_08715) rpsR 1831573..1831812 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  RIM75_RS08720 (RIM75_08720) ssbA 1831971..1832459 (-) 489 WP_012679031.1 single-stranded DNA-binding protein Machinery gene
  RIM75_RS08725 (RIM75_08725) rpsF 1832478..1832768 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  RIM75_RS08730 (RIM75_08730) - 1833830..1834055 (-) 226 Protein_1649 HicB family protein -
  RIM75_RS08735 (RIM75_08735) mutY 1834144..1835292 (+) 1149 WP_012679029.1 A/G-specific adenine glycosylase -
  RIM75_RS08740 (RIM75_08740) - 1836064..1837269 (+) 1206 WP_317583074.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17750.59 Da        Isoelectric Point: 5.1951

>NTDB_id=877989 RIM75_RS08720 WP_012679031.1 1831971..1832459(-) (ssbA) [Streptococcus equi subsp. equi strain HT1112]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDGSPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=877989 RIM75_RS08720 WP_012679031.1 1831971..1832459(-) (ssbA) [Streptococcus equi subsp. equi strain HT1112]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGGAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377