Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   QMM10_RS08950 Genome accession   NZ_AP025938
Coordinates   1765166..1766332 (-) Length   388 a.a.
NCBI ID   WP_001085462.1    Uniprot ID   P0A451
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1760166..1771332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS08920 (PC1044_17460) - 1760499..1760924 (-) 426 WP_000204066.1 hypothetical protein -
  QMM10_RS08925 (PC1044_17470) - 1761053..1761412 (-) 360 WP_000749821.1 hypothetical protein -
  QMM10_RS08930 (PC1044_17480) - 1761458..1761664 (-) 207 WP_000366088.1 hypothetical protein -
  QMM10_RS08935 (PC1044_17490) - 1761651..1761812 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  QMM10_RS08940 (PC1044_17500) lytA 1762158..1763114 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  QMM10_RS08945 (PC1044_17510) - 1763490..1764860 (-) 1371 WP_050204754.1 MATE family efflux transporter -
  QMM10_RS08950 (PC1044_17520) recA 1765166..1766332 (-) 1167 WP_001085462.1 recombinase RecA Machinery gene
  QMM10_RS08955 (PC1044_17530) cinA 1766387..1767601 (-) 1215 WP_281962104.1 competence/damage-inducible protein A Machinery gene
  QMM10_RS08960 (PC1044_17540) - 1767783..1769129 (-) 1347 WP_050207251.1 IS1380-like element ISSpn5 family transposase -
  QMM10_RS08965 (PC1044_17550) - 1769436..1770452 (-) 1017 WP_001844932.1 LCP family protein -
  QMM10_RS08970 (PC1044_17560) - 1770460..1770978 (-) 519 WP_000455536.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 388 a.a.        Molecular weight: 41949.78 Da        Isoelectric Point: 4.8403

>NTDB_id=79079 QMM10_RS08950 WP_001085462.1 1765166..1766332(-) (recA) [Streptococcus pneumoniae strain PZ900701057]
MAKKPKKLEEISKKFGAEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKEAVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSE
NAKKYLAEHPEIFDEIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEAVNEEVPLDLGDELEIEIEE

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=79079 QMM10_RS08950 WP_001085462.1 1765166..1766332(-) (recA) [Streptococcus pneumoniae strain PZ900701057]
ATGGCGAAAAAACCAAAAAAATTAGAAGAAATTTCAAAAAAATTTGGGGCAGAACGTGAAAAGGCCTTGAATGACGCTCT
TAAATTGATTGAGAAAGACTTTGGTAAAGGATCAATCATGCGTTTGGGTGAACGTGCGGAGCAAAAGGTGCAAGTGATGA
GCTCAGGTTCTTTAGCTCTTGACATTGCCCTTGGCTCAGGTGGTTATCCTAAGGGACGTATCATCGAAATCTATGGCCCA
GAGTCATCTGGTAAGACAACGGTTGCCCTTCATGCAGTTGCACAAGCGCAAAAAGAAGGTGGGATTGCTGCCTTTATCGA
TGCGGAACATGCCCTTGATCCAGCTTATGCTGCGGCCCTTGGTGTCAATATTGACGAATTGCTCTTGTCTCAACCAGACT
CAGGAGAGCAAGGTCTTGAGATTGCGGGAAAATTGATTGACTCAGGTGCAGTTGATCTTGTCGTAGTCGACTCAGTTGCT
GCCCTTGTTCCTCGTGCGGAAATTGATGGAGATATCGGAGATAGCCATGTTGGTTTGCAGGCTCGTATGATGAGCCAGGC
CATGCGTAAACTTGGCGCCTCTATCAATAAAACCAAAACAATTGCCATTTTTATCAACCAATTGCGTGAAAAAGTTGGAG
TGATGTTTGGAAATCCAGAAACAACACCGGGCGGACGTGCTTTGAAATTCTATGCTTCAGTCCGCTTGGATGTTCGTGGT
AATACACAAATTAAGGGAACTGGTGATCAAAAAGAAACCAATGTCGGTAAAGAAACTAAGATTAAGGTTGTAAAAAATAA
GGTAGCTCCACCGTTTAAGGAAGCCGTAGTTGAAATTATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTTTTGAAGA
TTGCAAGCGATTTGGATATTATCAAAAAAGCAGGGGCTTGGTATTCTTACAAAGATGAAAAAATTGGGCAAGGTTCTGAG
AATGCTAAGAAATACTTGGCAGAGCACCCAGAAATCTTTGATGAAATTGATAAGCAAGTCCGTTCTAAATTTGGCTTGAT
TGATGGAGAAGAAGTTTCAGAACAAGATACTGAAAACAAAAAAGATGAGCCAAAGAAAGAAGAAGCAGTGAATGAAGAAG
TTCCGCTTGACTTAGGCGATGAACTTGAAATCGAAATTGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0A451

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R36A

100

100

1

  recA Streptococcus pneumoniae Rx1

100

100

1

  recA Streptococcus pneumoniae D39

100

100

1

  recA Streptococcus pneumoniae R6

100

100

1

  recA Streptococcus pneumoniae TIGR4

100

100

1

  recA Streptococcus mitis NCTC 12261

94.072

100

0.941

  recA Streptococcus mitis SK321

93.557

100

0.936

  recA Streptococcus thermophilus LMG 18311

84.715

99.485

0.843

  recA Streptococcus thermophilus LMD-9

84.935

99.227

0.843

  recA Streptococcus mutans UA159

83.204

99.742

0.83

  recA Streptococcus pyogenes NZ131

90.725

88.918

0.807

  recA Lactococcus lactis subsp. cremoris KW2

78.409

90.722

0.711

  recA Latilactobacillus sakei subsp. sakei 23K

67.919

89.175

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

68.788

85.052

0.585

  recA Staphylococcus aureus strain ATCC 12600

64.943

89.691

0.582

  recA Glaesserella parasuis strain SC1401

57.641

96.134

0.554

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.706

83.247

0.539

  recA Acinetobacter nosocomialis M2

59.827

89.175

0.534

  recA Neisseria gonorrhoeae MS11

60.177

87.371

0.526

  recA Neisseria gonorrhoeae strain FA1090

60.177

87.371

0.526

  recA Vibrio cholerae strain A1552

62.848

83.247

0.523

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

83.247

0.523

  recA Acinetobacter baumannii D1279779

61.963

84.021

0.521

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

85.309

0.518

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.824

87.629

0.515

  recA Acinetobacter baylyi ADP1

61.35

84.021

0.515

  recA Helicobacter pylori strain NCTC11637

56.125

90.464

0.508

  recA Helicobacter pylori 26695

56.125

90.464

0.508

  recA Pseudomonas stutzeri DSM 10701

59.509

84.021

0.5

  recA Ralstonia pseudosolanacearum GMI1000

59.937

81.701

0.49