Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QMM10_RS08955 Genome accession   NZ_AP025938
Coordinates   1766387..1767601 (-) Length   404 a.a.
NCBI ID   WP_281962104.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761387..1772601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS08930 (PC1044_17480) - 1761458..1761664 (-) 207 WP_000366088.1 hypothetical protein -
  QMM10_RS08935 (PC1044_17490) - 1761651..1761812 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  QMM10_RS08940 (PC1044_17500) lytA 1762158..1763114 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  QMM10_RS08945 (PC1044_17510) - 1763490..1764860 (-) 1371 WP_050204754.1 MATE family efflux transporter -
  QMM10_RS08950 (PC1044_17520) recA 1765166..1766332 (-) 1167 WP_001085462.1 recombinase RecA Machinery gene
  QMM10_RS08955 (PC1044_17530) cinA 1766387..1767601 (-) 1215 WP_281962104.1 competence/damage-inducible protein A Machinery gene
  QMM10_RS08960 (PC1044_17540) - 1767783..1769129 (-) 1347 WP_050207251.1 IS1380-like element ISSpn5 family transposase -
  QMM10_RS08965 (PC1044_17550) - 1769436..1770452 (-) 1017 WP_001844932.1 LCP family protein -
  QMM10_RS08970 (PC1044_17560) - 1770460..1770978 (-) 519 WP_000455536.1 GNAT family N-acetyltransferase -
  QMM10_RS08975 (PC1044_17570) tsaE 1770968..1771411 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QMM10_RS08980 (PC1044_17580) comM 1771497..1772117 (-) 621 WP_000839915.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43722.89 Da        Isoelectric Point: 4.6303

>NTDB_id=79080 QMM10_RS08955 WP_281962104.1 1766387..1767601(-) (cinA) [Streptococcus pneumoniae strain PZ900701057]
MIWVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSLLEIASQRSSLVILTGGLGPTEDDLTKQTLAKFLGKALVFDPQ
AQEKLDIFFALRPDYARTPNNERQAQIVEGAIPLPNETGLAVGGKLEVDGVTYVVLPGPPSELKPMVLNQLLPKLMTGSK
LYSRVLRFFGIGESQLVTILADLIDNQIDPTLAPYAKTGEVTLRLSTKASSQEEANQALDILENQILDCQTFEGISLRDF
CYGYGEETSLASIVVEELKRQGKTIAAAESLTAGLFQATVANFSGVSSIFKGGFVTYSLEEKSRMLDIPAKNLEEHGVVS
EFTAQKMAEQARSKTQSDFGISLTGVAGPDSLEGHPVGTVFIGLAQDQGTEVIKVNIGGRSRADVRHIAVMHAFNLVRKA
LLSD

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=79080 QMM10_RS08955 WP_281962104.1 1766387..1767601(-) (cinA) [Streptococcus pneumoniae strain PZ900701057]
ATGATTTGGGTCAACACCAATGCCCAGTTTTTGTCGGAAAAACTAGCTGAGATTGGGGTAGATGTATATTTTCAGACGGC
TGTAGGAGACAATGAAGTTCGTCTCTTGTCTTTGCTTGAGATTGCCAGTCAACGTAGCAGTCTGGTGATTTTGACAGGCG
GTTTGGGGCCAACTGAGGACGACCTAACCAAACAAACCCTAGCTAAATTTTTAGGGAAAGCATTAGTCTTTGATCCTCAG
GCTCAGGAGAAGTTGGATATCTTTTTTGCCCTGCGACCAGACTATGCCCGAACACCGAATAACGAAAGACAAGCTCAAAT
TGTAGAAGGAGCGATTCCACTGCCAAACGAAACAGGACTGGCTGTTGGAGGAAAATTAGAAGTAGACGGAGTGACCTATG
TCGTCCTTCCAGGTCCGCCAAGTGAATTGAAACCCATGGTCTTAAACCAACTTCTACCCAAGTTGATGACAGGGAGCAAG
CTGTATTCCCGAGTTCTTCGTTTCTTTGGGATTGGCGAGAGCCAGTTGGTTACGATTTTGGCTGATTTAATTGATAATCA
GATCGATCCTACCTTGGCCCCTTATGCCAAGACAGGAGAAGTCACTCTACGTCTGTCAACAAAGGCTAGCAGTCAAGAAG
AGGCGAATCAAGCGCTGGATATCTTGGAAAATCAAATCTTGGACTGCCAGACTTTCGAAGGAATTTCTTTACGAGACTTT
TGCTATGGTTATGGGGAAGAAACTAGTTTAGCCAGCATTGTGGTAGAAGAACTGAAAAGGCAAGGGAAAACCATCGCGGC
TGCAGAGAGTTTGACGGCAGGTCTTTTCCAAGCTACCGTGGCGAATTTTTCTGGAGTTTCAAGTATATTTAAGGGTGGTT
TTGTGACCTATAGCTTGGAGGAAAAATCAAGGATGTTGGATATTCCTGCCAAGAATTTGGAAGAACATGGTGTGGTGTCT
GAATTTACAGCTCAGAAGATGGCTGAGCAGGCACGAAGCAAGACCCAGTCTGATTTTGGAATTAGTTTGACTGGAGTGGC
AGGACCAGATAGCCTAGAAGGACACCCAGTTGGGACAGTCTTCATAGGCTTGGCGCAAGATCAAGGAACTGAGGTTATCA
AGGTTAATATTGGAGGCAGAAGCCGAGCAGATGTACGTCACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCT
TTATTAAGTGACTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(248-400)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-155)

Damage-inducible protein CinA KH domain (CinA_KH)

(163-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

99.751

99.257

0.99
  cinA Streptococcus pneumoniae R36A

99.501

99.257

0.988
  cinA Streptococcus pneumoniae Rx1

99.501

99.257

0.988
  cinA Streptococcus pneumoniae R6

99.501

99.257

0.988
  cinA Streptococcus pneumoniae D39

99.252

99.257

0.985
  cinA Streptococcus mitis SK321

93.516

99.257

0.928
  cinA Streptococcus mitis NCTC 12261

93.267

99.257

0.926
  cinA Streptococcus mutans UA159

70.075

99.257

0.696
  cinA Streptococcus suis isolate S10

53.383

98.762

0.527
  cinA Bacillus subtilis subsp. subtilis str. 168

44.14

99.257

0.438

Multiple sequence alignment