Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TthTMY_RS10925 Genome accession   NZ_AP025158
Coordinates   2022063..2023085 (-) Length   340 a.a.
NCBI ID   WP_096411266.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2017063..2028085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS10905 (TthTMY_21670) - 2018213..2018854 (-) 642 WP_223903278.1 S4 domain-containing protein -
  TthTMY_RS10910 (TthTMY_21680) fabZ 2018854..2019282 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  TthTMY_RS10915 (TthTMY_21690) - 2019289..2020326 (-) 1038 WP_096411264.1 rod shape-determining protein -
  TthTMY_RS10920 (TthTMY_21700) rny 2020338..2022062 (-) 1725 WP_096411265.1 ribonuclease Y -
  TthTMY_RS10925 (TthTMY_21710) recA 2022063..2023085 (-) 1023 WP_096411266.1 recombinase RecA Machinery gene
  TthTMY_RS10930 (TthTMY_21720) thpR 2023036..2023632 (-) 597 WP_223903279.1 RNA 2',3'-cyclic phosphodiesterase -
  TthTMY_RS10935 (TthTMY_21730) cinA 2023629..2024813 (-) 1185 WP_096411267.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TthTMY_RS10940 (TthTMY_21740) - 2024786..2025562 (-) 777 WP_172844650.1 glycine cleavage system protein T -
  TthTMY_RS10945 (TthTMY_21750) - 2025602..2026651 (+) 1050 WP_096411269.1 MFS transporter -
  TthTMY_RS10950 (TthTMY_21760) - 2026644..2027270 (+) 627 WP_096411270.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36533.12 Da        Isoelectric Point: 5.2098

>NTDB_id=76463 TthTMY_RS10925 WP_096411266.1 2022063..2023085(-) (recA) [Thermus thermophilus strain TMY]
MDESKRKALENALKAIEKEFGKGAVMWLGEMPRQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIA
QAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLAKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGV
KVRVKVVKNKLAPPFREAELEIYFGRGLDPVMDLVNVAVAAGVIEKAGSWFSYGELRLGQGKEKAAEALRERPELLEEIR
AKVLERSDQVVLAAGEDEGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=76463 TthTMY_RS10925 WP_096411266.1 2022063..2023085(-) (recA) [Thermus thermophilus strain TMY]
ATGGACGAGAGCAAGCGCAAGGCCCTGGAGAACGCCCTGAAGGCGATTGAGAAGGAATTCGGCAAGGGGGCGGTGATGTG
GCTGGGCGAGATGCCCAGGCAACAGGTGGACGTGATCCCCACAGGCTCCCTCGCCCTAGACCTCGCCCTGGGGATCGGCG
GCATCCCCCGGGGGCGGATCGTGGAGATCTACGGCCCCGAGTCCGGGGGCAAGACCACCCTGGCCCTCACCATCATCGCC
CAGGCCCAGAGGCGGGGCGGGGTGGCCGCCTTCGTGGACGCGGAGCACGCCCTGGACCCCCTATACGCCCAGCGCCTCGG
CGTCCAGGTGGAAGACCTCCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGTGGAGCTCCTCGCCCGCT
CGGGGGCGGTGGACGTGATCGTGGTGGACTCGGTGGCCGCTTTGGTCCCCCGGGCGGAGATTGAGGGGGAGATGGGGGAT
CAGCACGTGGGCCTCCAGGCCCGGCTCATGAGCCAGGCCCTCCGCAAGCTCACCGCGGTGCTCGCCAAGAGCAACACCGC
CGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGGTCATGTACGGCAACCCCGAGACCACCCCGGGGGGGAGGGCGC
TGAAGTTCTACGCCAGCGTGCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGGAACGAGGCCGTGGGGGTC
AAGGTGCGGGTCAAGGTGGTGAAGAACAAGCTCGCCCCCCCCTTCCGCGAGGCGGAGCTGGAGATCTACTTCGGCCGGGG
GCTGGACCCCGTCATGGACCTGGTGAACGTGGCCGTGGCCGCGGGGGTGATTGAGAAGGCCGGGTCCTGGTTCTCCTACG
GGGAGCTCCGCCTGGGCCAGGGGAAGGAGAAGGCGGCCGAGGCCCTGCGGGAGCGGCCCGAGCTTTTGGAGGAGATCCGG
GCCAAGGTCTTGGAGCGCTCGGACCAGGTGGTCCTGGCCGCAGGCGAGGACGAGGGGGAGTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.75

94.118

0.647
  recA Pseudomonas stutzeri DSM 10701

63.746

97.353

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

100

0.615
  recA Acinetobacter baylyi ADP1

59.71

100

0.606
  recA Streptococcus thermophilus LMD-9

62.654

95.294

0.597
  recA Streptococcus thermophilus LMG 18311

62.654

95.294

0.597
  recA Streptococcus pyogenes NZ131

62.346

95.294

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

94.706

0.594
  recA Glaesserella parasuis strain SC1401

58.772

100

0.591
  recA Staphylococcus aureus strain ATCC 12600

61.656

95.882

0.591
  recA Streptococcus mutans UA159

61.728

95.294

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

95.588

0.588
  recA Vibrio cholerae strain A1552

61.538

95.588

0.588
  recA Streptococcus pneumoniae D39

61.801

94.706

0.585
  recA Streptococcus pneumoniae TIGR4

61.801

94.706

0.585
  recA Streptococcus mitis SK321

61.801

94.706

0.585
  recA Streptococcus mitis NCTC 12261

61.801

94.706

0.585
  recA Streptococcus pneumoniae R36A

61.801

94.706

0.585
  recA Streptococcus pneumoniae Rx1

61.801

94.706

0.585
  recA Streptococcus pneumoniae R6

61.801

94.706

0.585
  recA Neisseria gonorrhoeae strain FA1090

61.111

95.294

0.582
  recA Neisseria gonorrhoeae MS11

61.111

95.294

0.582
  recA Acinetobacter nosocomialis M2

60.736

95.882

0.582
  recA Acinetobacter baumannii D1279779

60.429

95.882

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

94.412

0.576
  recA Helicobacter pylori strain NCTC11637

59.816

95.882

0.574
  recA Helicobacter pylori 26695

59.816

95.882

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.752

95

0.568
  recA Ralstonia pseudosolanacearum GMI1000

61.736

91.471

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.667

97.059

0.55

Multiple sequence alignment