Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TthTMY_RS10935 Genome accession   NZ_AP025158
Coordinates   2023629..2024813 (-) Length   394 a.a.
NCBI ID   WP_096411267.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018629..2029813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS10910 (TthTMY_21680) fabZ 2018854..2019282 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  TthTMY_RS10915 (TthTMY_21690) - 2019289..2020326 (-) 1038 WP_096411264.1 rod shape-determining protein -
  TthTMY_RS10920 (TthTMY_21700) rny 2020338..2022062 (-) 1725 WP_096411265.1 ribonuclease Y -
  TthTMY_RS10925 (TthTMY_21710) recA 2022063..2023085 (-) 1023 WP_096411266.1 recombinase RecA Machinery gene
  TthTMY_RS10930 (TthTMY_21720) thpR 2023036..2023632 (-) 597 WP_223903279.1 RNA 2',3'-cyclic phosphodiesterase -
  TthTMY_RS10935 (TthTMY_21730) cinA 2023629..2024813 (-) 1185 WP_096411267.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TthTMY_RS10940 (TthTMY_21740) - 2024786..2025562 (-) 777 WP_172844650.1 glycine cleavage system protein T -
  TthTMY_RS10945 (TthTMY_21750) - 2025602..2026651 (+) 1050 WP_096411269.1 MFS transporter -
  TthTMY_RS10950 (TthTMY_21760) - 2026644..2027270 (+) 627 WP_096411270.1 HAD family hydrolase -
  TthTMY_RS10955 (TthTMY_21770) - 2027256..2028341 (-) 1086 WP_172844651.1 enolase C-terminal domain-like protein -
  TthTMY_RS10960 (TthTMY_21780) - 2028352..2029071 (-) 720 WP_096411272.1 hypothetical protein -
  TthTMY_RS10965 (TthTMY_21790) - 2029105..2029602 (+) 498 WP_096411273.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42872.34 Da        Isoelectric Point: 7.0533

>NTDB_id=76464 TthTMY_RS10935 WP_096411267.1 2023629..2024813(-) (cinA) [Thermus thermophilus strain TMY]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKTLLKE
VWGEGEMTLAEAVKRRMEREGATLATMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=76464 TthTMY_RS10935 WP_096411267.1 2023629..2024813(-) (cinA) [Thermus thermophilus strain TMY]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAAAGGACCCTTAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGGCGCGCCATGCCTGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCGGGGTGGTGGGTGCGCAAAGGGGGTAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTTCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCCTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTTGCCGAGCGGATCAAGAAAACGCTCCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAAGGGGCCACCCTCGCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGAGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTATTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTTTCCGCCGAGACCGCC
CGGGCCATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGCGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAAACCGTGCGCTTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-236)

Competence-damaged protein (CinA)

(248-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

35.835

100

0.376
  cinA Streptococcus mitis NCTC 12261

35.437

100

0.371
  cinA Streptococcus pneumoniae TIGR4

35.28

100

0.368
  cinA Streptococcus pneumoniae R36A

35.036

100

0.365
  cinA Streptococcus pneumoniae Rx1

35.036

100

0.365
  cinA Streptococcus pneumoniae R6

35.036

100

0.365
  cinA Streptococcus pneumoniae D39

34.793

100

0.363

Multiple sequence alignment