Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDO79_RS09260 Genome accession   NZ_AP024984
Coordinates   1703330..1704352 (-) Length   340 a.a.
NCBI ID   WP_011228937.1    Uniprot ID   Q5SHB2
Organism   Thermus thermophilus strain JCM10941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1698330..1709352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS09240 (JCM10941_17970) - 1699480..1700121 (-) 642 WP_011173838.1 S4 domain-containing protein -
  LDO79_RS09245 (JCM10941_17980) fabZ 1700121..1700549 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LDO79_RS09250 (JCM10941_17990) - 1700556..1701593 (-) 1038 WP_011173840.1 rod shape-determining protein -
  LDO79_RS09255 (JCM10941_18000) rny 1701605..1703329 (-) 1725 WP_011228936.1 ribonuclease Y -
  LDO79_RS09260 (JCM10941_18010) recA 1703330..1704352 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  LDO79_RS09265 (JCM10941_18020) thpR 1704303..1704899 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  LDO79_RS09270 (JCM10941_18030) cinA 1704896..1706080 (-) 1185 WP_011228938.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  LDO79_RS09275 (JCM10941_18040) - 1706053..1706829 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  LDO79_RS09280 (JCM10941_18050) - 1706869..1707918 (+) 1050 WP_011173846.1 MFS transporter -
  LDO79_RS09285 (JCM10941_18060) - 1707911..1708537 (+) 627 WP_011228939.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36384.88 Da        Isoelectric Point: 5.3787

>NTDB_id=76410 LDO79_RS09260 WP_011228937.1 1703330..1704352(-) (recA) [Thermus thermophilus strain JCM10941]
MDESKRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIA
QAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLAKSNTAAIFINQVREKVGVTYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGV
KVRVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGKEKAAEALRERPELLEEIR
AKVLERSDQVVLAAGEDEGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=76410 LDO79_RS09260 WP_011228937.1 1703330..1704352(-) (recA) [Thermus thermophilus strain JCM10941]
ATGGACGAGAGCAAGCGCAAGGCCCTGGAGAACGCCCTGAAGGCGATTGAGAAGGAGTTCGGCAAGGGGGCGGTGATGCG
GCTGGGCGAGATGCCCAAGCAGCAGGTGGACGTGATCCCCACCGGCTCCCTCGCCCTAGACCTCGCCCTGGGGATCGGCG
GCATCCCCCGGGGGCGGATCGTGGAGATCTATGGCCCCGAGTCCGGGGGCAAGACCACCCTCGCCCTCACCATCATCGCC
CAGGCCCAGAGGCGGGGCGGGGTGGCCGCCTTCGTGGATGCGGAGCACGCCCTGGACCCCCTGTACGCCCAGCGCCTCGG
CGTCCAGGTGGAGGACCTCCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGTGGAGCTCCTCGCCCGCT
CGGGGGCGGTGGACGTGATCGTGGTGGACTCGGTGGCCGCCTTGGTCCCCCGGGCGGAGATTGAGGGGGAGATGGGGGAC
CAGCACGTGGGCCTCCAGGCCCGGCTCATGAGCCAGGCCCTCCGCAAGCTCACCGCGGTGCTCGCCAAGAGCAACACCGC
CGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGGTCACGTACGGCAACCCCGAGACCACCCCGGGGGGGAGGGCGC
TGAAGTTCTACGCCAGCGTGCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGGAACGAGGCCGTGGGCGTC
AAGGTGCGGGTCAAGGTGGTGAAGAACAAGCTCGCCCCCCCCTTCCGCGAGGCGGAGCTGGAGATCTACTTCGGCCGGGG
CCTGGACCCGGTGGCCGACCTGGTGAACGTGGCCGTGGCCGCGGGGGTCATTGAGAAGGCCGGGTCCTGGTTCTCCTACG
GGGAGCTCCGCCTGGGCCAGGGGAAGGAGAAGGCGGCCGAGGCCCTGCGGGAGCGGCCCGAGCTTTTGGAGGAGATCCGC
GCCAAGGTCTTGGAGCGCTCGGACCAGGTGGTCCTGGCCGCGGGCGAGGACGAGGGGGAGTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5SHB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.75

94.118

0.647
  recA Pseudomonas stutzeri DSM 10701

63.444

97.353

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.756

100

0.615
  recA Acinetobacter baylyi ADP1

59.71

100

0.606
  recA Streptococcus thermophilus LMD-9

62.654

95.294

0.597
  recA Streptococcus thermophilus LMG 18311

62.654

95.294

0.597
  recA Streptococcus pyogenes NZ131

62.346

95.294

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

94.706

0.591
  recA Glaesserella parasuis strain SC1401

58.48

100

0.588
  recA Staphylococcus aureus strain ATCC 12600

61.35

95.882

0.588
  recA Streptococcus mutans UA159

61.728

95.294

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

95.588

0.588
  recA Vibrio cholerae strain A1552

61.538

95.588

0.588
  recA Streptococcus pneumoniae TIGR4

61.801

94.706

0.585
  recA Streptococcus pneumoniae R6

61.801

94.706

0.585
  recA Streptococcus mitis SK321

61.801

94.706

0.585
  recA Streptococcus mitis NCTC 12261

61.801

94.706

0.585
  recA Streptococcus pneumoniae R36A

61.801

94.706

0.585
  recA Streptococcus pneumoniae Rx1

61.801

94.706

0.585
  recA Streptococcus pneumoniae D39

61.801

94.706

0.585
  recA Acinetobacter nosocomialis M2

60.736

95.882

0.582
  recA Acinetobacter baumannii D1279779

60.429

95.882

0.579
  recA Neisseria gonorrhoeae strain FA1090

60.802

95.294

0.579
  recA Neisseria gonorrhoeae MS11

60.802

95.294

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

94.412

0.576
  recA Helicobacter pylori 26695

59.816

95.882

0.574
  recA Helicobacter pylori strain NCTC11637

59.816

95.882

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.752

95

0.568
  recA Ralstonia pseudosolanacearum GMI1000

61.415

91.471

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.364

97.059

0.547

Multiple sequence alignment