Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LDO79_RS09270 Genome accession   NZ_AP024984
Coordinates   1704896..1706080 (-) Length   394 a.a.
NCBI ID   WP_011228938.1    Uniprot ID   Q5SHB0
Organism   Thermus thermophilus strain JCM10941     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699896..1711080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS09245 (JCM10941_17980) fabZ 1700121..1700549 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LDO79_RS09250 (JCM10941_17990) - 1700556..1701593 (-) 1038 WP_011173840.1 rod shape-determining protein -
  LDO79_RS09255 (JCM10941_18000) rny 1701605..1703329 (-) 1725 WP_011228936.1 ribonuclease Y -
  LDO79_RS09260 (JCM10941_18010) recA 1703330..1704352 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  LDO79_RS09265 (JCM10941_18020) thpR 1704303..1704899 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  LDO79_RS09270 (JCM10941_18030) cinA 1704896..1706080 (-) 1185 WP_011228938.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  LDO79_RS09275 (JCM10941_18040) - 1706053..1706829 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  LDO79_RS09280 (JCM10941_18050) - 1706869..1707918 (+) 1050 WP_011173846.1 MFS transporter -
  LDO79_RS09285 (JCM10941_18060) - 1707911..1708537 (+) 627 WP_011228939.1 HAD family phosphatase -
  LDO79_RS09290 (JCM10941_18070) - 1708523..1709608 (-) 1086 WP_164926074.1 enolase C-terminal domain-like protein -
  LDO79_RS09295 (JCM10941_18080) - 1709626..1710339 (-) 714 WP_011228941.1 hypothetical protein -
  LDO79_RS09300 (JCM10941_18090) - 1710372..1710869 (+) 498 WP_008633771.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42915.40 Da        Isoelectric Point: 8.2381

>NTDB_id=76411 LDO79_RS09270 WP_011228938.1 1704896..1706080(-) (cinA) [Thermus thermophilus strain JCM10941]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=76411 LDO79_RS09270 WP_011228938.1 1704896..1706080(-) (cinA) [Thermus thermophilus strain JCM10941]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAAACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTATCTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCTTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4CT8
  PDB 4CT9
  PDB 4CTA
  PDB 4UOC
  PDB 4UUW
  PDB 4UUX

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363