Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDO09_RS09875 Genome accession   NZ_AP024926
Coordinates   1818894..1819916 (-) Length   340 a.a.
NCBI ID   WP_143586689.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813894..1824916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS09855 (TthAA11_19450) - 1815044..1815685 (-) 642 WP_143586686.1 S4 domain-containing protein -
  LDO09_RS09860 (TthAA11_19460) fabZ 1815685..1816113 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LDO09_RS09865 (TthAA11_19470) - 1816120..1817157 (-) 1038 WP_011173840.1 rod shape-determining protein -
  LDO09_RS09870 (TthAA11_19480) rny 1817169..1818893 (-) 1725 WP_014630294.1 ribonuclease Y -
  LDO09_RS09875 (TthAA11_19490) recA 1818894..1819916 (-) 1023 WP_143586689.1 recombinase RecA Machinery gene
  LDO09_RS09880 (TthAA11_19500) thpR 1819867..1820463 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  LDO09_RS09885 (TthAA11_19510) cinA 1820460..1821644 (-) 1185 WP_223968738.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  LDO09_RS09890 (TthAA11_19520) - 1821617..1822393 (-) 777 WP_223968740.1 glycine cleavage system protein T -
  LDO09_RS09895 (TthAA11_19530) - 1822433..1823482 (+) 1050 WP_143586693.1 MFS transporter -
  LDO09_RS09900 (TthAA11_19540) - 1823475..1824101 (+) 627 WP_143586695.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36341.91 Da        Isoelectric Point: 5.3823

>NTDB_id=75874 LDO09_RS09875 WP_143586689.1 1818894..1819916(-) (recA) [Thermus thermophilus strain AA1-1]
MDESKRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIA
QAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLAKSNTAAIFINQVREKVGVMYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGV
KVRVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGKEKAAEALRERPELLEEIR
AKVLERAGEVVLAAGEDEGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=75874 LDO09_RS09875 WP_143586689.1 1818894..1819916(-) (recA) [Thermus thermophilus strain AA1-1]
ATGGACGAGAGCAAGCGCAAGGCCCTGGAGAACGCCCTGAAGGCGATTGAGAAGGAGTTCGGCAAGGGGGCGGTGATGCG
GCTGGGCGAGATGCCCAAGCAGCAGGTGGACGTGATCCCCACCGGCTCCCTCGCCCTAGACCTCGCCCTGGGGATCGGCG
GCATCCCCAGGGGGCGGATCGTGGAGATCTACGGCCCCGAGTCCGGGGGCAAGACCACCCTCGCCCTCACCATCATCGCC
CAGGCCCAGAGGCGGGGCGGGGTGGCCGCCTTCGTGGACGCGGAGCACGCCCTGGACCCCCTCTACGCCCAGCGCCTCGG
CGTCCAGGTGGAGGACCTCCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGTGGAGCTCCTCGCCCGCT
CGGGGGCGGTGGACGTGATCGTGGTGGACTCGGTGGCTGCTTTGGTCCCCCGGGCGGAGATTGAGGGAGAGATGGGGGAC
CAGCACGTGGGCCTCCAGGCCCGGCTCATGAGCCAGGCCCTCCGCAAGCTCACCGCGGTGCTCGCCAAGAGCAACACCGC
CGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGGTCATGTACGGCAACCCCGAGACCACCCCGGGGGGGAGGGCGC
TGAAGTTCTACGCCAGCGTGCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGGAACGAGGCCGTGGGCGTC
AAGGTGCGGGTCAAGGTGGTGAAGAACAAGCTCGCCCCCCCCTTCCGCGAGGCGGAGCTGGAGATCTACTTCGGCCGGGG
GCTGGACCCGGTGGCCGACCTGGTGAACGTGGCCGTGGCCGCGGGGGTCATTGAGAAGGCCGGGTCCTGGTTCTCCTACG
GGGAGCTCCGCCTGGGCCAGGGGAAGGAGAAGGCGGCCGAGGCCCTGCGGGAGCGGCCCGAGCTTTTGGAGGAGATCCGC
GCCAAGGTCTTGGAGCGGGCCGGGGAGGTGGTCCTGGCCGCGGGCGAGGACGAGGGGGAGTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.502

96.176

0.659
  recA Pseudomonas stutzeri DSM 10701

64.024

96.471

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.224

100

0.618
  recA Streptococcus thermophilus LMG 18311

62.162

97.941

0.609
  recA Acinetobacter baylyi ADP1

59.593

100

0.603
  recA Streptococcus thermophilus LMD-9

62.963

95.294

0.6
  recA Streptococcus pyogenes NZ131

62.654

95.294

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

62.654

95.294

0.597
  recA Staphylococcus aureus strain ATCC 12600

61.585

96.471

0.594
  recA Streptococcus pneumoniae Rx1

61.468

96.176

0.591
  recA Streptococcus pneumoniae R36A

61.468

96.176

0.591
  recA Streptococcus pneumoniae D39

61.468

96.176

0.591
  recA Streptococcus pneumoniae R6

61.468

96.176

0.591
  recA Streptococcus pneumoniae TIGR4

61.468

96.176

0.591
  recA Glaesserella parasuis strain SC1401

58.772

100

0.591
  recA Streptococcus mutans UA159

62.037

95.294

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

95.588

0.591
  recA Vibrio cholerae strain A1552

61.846

95.588

0.591
  recA Streptococcus mitis SK321

62.112

94.706

0.588
  recA Streptococcus mitis NCTC 12261

62.112

94.706

0.588
  recA Acinetobacter nosocomialis M2

61.043

95.882

0.585
  recA Neisseria gonorrhoeae strain FA1090

61.111

95.294

0.582
  recA Neisseria gonorrhoeae MS11

61.111

95.294

0.582
  recA Acinetobacter baumannii D1279779

60.736

95.882

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

94.412

0.579
  recA Helicobacter pylori strain NCTC11637

59.878

96.765

0.579
  recA Helicobacter pylori 26695

59.878

96.765

0.579
  recA Lactococcus lactis subsp. cremoris KW2

60.062

95

0.571
  recA Ralstonia pseudosolanacearum GMI1000

61.661

92.059

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.667

97.059

0.55

Multiple sequence alignment