Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LDO09_RS09885 Genome accession   NZ_AP024926
Coordinates   1820460..1821644 (-) Length   394 a.a.
NCBI ID   WP_223968738.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA1-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815460..1826644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS09860 (TthAA11_19460) fabZ 1815685..1816113 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LDO09_RS09865 (TthAA11_19470) - 1816120..1817157 (-) 1038 WP_011173840.1 rod shape-determining protein -
  LDO09_RS09870 (TthAA11_19480) rny 1817169..1818893 (-) 1725 WP_014630294.1 ribonuclease Y -
  LDO09_RS09875 (TthAA11_19490) recA 1818894..1819916 (-) 1023 WP_143586689.1 recombinase RecA Machinery gene
  LDO09_RS09880 (TthAA11_19500) thpR 1819867..1820463 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  LDO09_RS09885 (TthAA11_19510) cinA 1820460..1821644 (-) 1185 WP_223968738.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  LDO09_RS09890 (TthAA11_19520) - 1821617..1822393 (-) 777 WP_223968740.1 glycine cleavage system protein T -
  LDO09_RS09895 (TthAA11_19530) - 1822433..1823482 (+) 1050 WP_143586693.1 MFS transporter -
  LDO09_RS09900 (TthAA11_19540) - 1823475..1824101 (+) 627 WP_143586695.1 HAD family phosphatase -
  LDO09_RS09905 (TthAA11_19550) - 1824087..1825172 (-) 1086 WP_172619214.1 enolase C-terminal domain-like protein -
  LDO09_RS09910 (TthAA11_19560) - 1825222..1825932 (-) 711 WP_143586699.1 hypothetical protein -
  LDO09_RS09915 (TthAA11_19570) - 1825965..1826462 (+) 498 WP_143586701.1 bioflim formation protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42945.43 Da        Isoelectric Point: 8.2381

>NTDB_id=75875 LDO09_RS09885 WP_223968738.1 1820460..1821644(-) (cinA) [Thermus thermophilus strain AA1-1]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRTMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=75875 LDO09_RS09885 WP_223968738.1 1820460..1821644(-) (cinA) [Thermus thermophilus strain AA1-1]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGTACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGGCGCACCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAAACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCCATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.663

100

0.376
  cinA Streptococcus mitis SK321

35.422

100

0.373
  cinA Streptococcus pneumoniae TIGR4

35.422

100

0.373
  cinA Streptococcus pneumoniae R36A

35.181

100

0.371
  cinA Streptococcus pneumoniae Rx1

35.181

100

0.371
  cinA Streptococcus pneumoniae R6

35.181

100

0.371
  cinA Streptococcus pneumoniae D39

34.94

100

0.368

Multiple sequence alignment