Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   Vgang_RS09345 Genome accession   NZ_AP021869
Coordinates   2030524..2031495 (-) Length   323 a.a.
NCBI ID   WP_105900893.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025524..2036495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS09335 - 2025548..2027437 (+) 1890 WP_105900894.1 TRAP transporter fused permease subunit -
  Vgang_RS09340 mutS 2027631..2030189 (+) 2559 WP_105900933.1 DNA mismatch repair protein MutS -
  Vgang_RS09345 rpoS 2030524..2031495 (-) 972 WP_105900893.1 RNA polymerase sigma factor RpoS Regulator
  Vgang_RS09350 - 2031600..2032379 (-) 780 WP_406708307.1 peptidoglycan DD-metalloendopeptidase family protein -
  Vgang_RS09355 - 2032424..2033050 (-) 627 WP_105900891.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  Vgang_RS09360 surE 2033132..2033875 (-) 744 WP_105900890.1 5'/3'-nucleotidase SurE -
  Vgang_RS09365 truD 2033907..2034959 (-) 1053 WP_105900889.1 tRNA pseudouridine(13) synthase TruD -
  Vgang_RS09370 ispF 2034982..2035458 (-) 477 WP_105900888.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  Vgang_RS09375 ispD 2035474..2036184 (-) 711 WP_105900887.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 37163.17 Da        Isoelectric Point: 4.5306

>NTDB_id=75105 Vgang_RS09345 WP_105900893.1 2030524..2031495(-) (rpoS) [Vibrio gangliei strain DSM 104291]
MSISNAVTKMNDIDDSEFDVEAMETEEVSQKDDIKEEYEISAKSLDATQLYLSEIGFSPLLTAEEEVLYARRALRGDAAA
RKRMIESNLRLVVKISRRYNSRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIH
VVKELNIYLRTARELAQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERVSSVDTPIGGEGEKALLDIIPDINNADPEFST
QDNDIKASLLDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLSMESLFDA
DYE

Nucleotide


Download         Length: 972 bp        

>NTDB_id=75105 Vgang_RS09345 WP_105900893.1 2030524..2031495(-) (rpoS) [Vibrio gangliei strain DSM 104291]
ATGAGTATCAGCAATGCAGTAACCAAAATGAATGACATCGATGATTCAGAATTCGATGTTGAAGCGATGGAAACTGAGGA
AGTTTCGCAAAAAGACGATATTAAAGAAGAGTATGAAATTTCGGCCAAAAGCCTTGATGCGACTCAACTTTATCTCAGTG
AAATCGGTTTTTCACCACTTCTCACCGCCGAAGAAGAAGTACTTTATGCTCGCCGAGCTTTACGTGGCGACGCAGCAGCA
CGCAAGCGTATGATCGAAAGTAACCTACGCTTAGTAGTTAAAATCTCTCGCCGTTATAATAGCCGTGGTTTGGCACTACT
TGATCTTATTGAAGAAGGTAACTTAGGCCTTATTCGTGCGGTAGAAAAGTTCGATCCAGAGCGCGGATTCCGTTTTTCAA
CTTACGCGACTTGGTGGATTCGTCAAACCATTGAACGCGCCTTAATGAATCAAACACGCACCATTAGGTTGCCTATTCAT
GTCGTCAAAGAGTTGAATATCTATTTGCGTACCGCGCGTGAATTAGCGCAAAAACTCGATCATGAACCCACTGCAGAAGA
AATCGCATTCCAATTGGATAAGCCAGTTGAAGACGTGAGTAAAATGCTGCGCTTGAATGAGCGCGTAAGTTCAGTGGATA
CGCCGATTGGCGGTGAAGGTGAAAAAGCGCTGCTGGATATTATCCCTGACATCAATAATGCTGATCCTGAGTTTTCAACT
CAAGACAACGACATTAAAGCGTCACTATTGGATTGGCTAGATGAGCTTAATCCCAAACAAAAAGAAGTGCTCGCACGTCG
CTTTGGACTTTTAGGCTATGAGCCATCCACTTTAGAAGAAGTTGGGCGTGAAATTAATTTAACTCGTGAACGTGTGCGTC
AAATTCAAGTTGAAGGTTTGCGCCGTTTACGTGAGATTTTGATGAAGCAAGGCTTGAGCATGGAGTCTTTGTTCGACGCG
GATTATGAATGA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(46-78)

Sigma-70 region 2 (Sigma70_r2)

(84-153)

Sigma-70 region 3 (Sigma70_r3)

(164-237)

Sigma-70, region 4 (Sigma70_r4)

(252-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.539

100

0.833

Multiple sequence alignment