Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NRS07_RS05205 Genome accession   NZ_CP103371
Coordinates   1153133..1154266 (-) Length   377 a.a.
NCBI ID   WP_259211604.1    Uniprot ID   -
Organism   Massilia sp. H6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1148133..1159266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRS07_RS05180 (NRS07_05180) - 1149073..1149792 (+) 720 WP_259211599.1 hypothetical protein -
  NRS07_RS05185 (NRS07_05185) - 1149812..1149958 (+) 147 WP_259211600.1 hypothetical protein -
  NRS07_RS05190 (NRS07_05190) rpoH 1150162..1151052 (-) 891 WP_259211601.1 RNA polymerase sigma factor RpoH -
  NRS07_RS05195 (NRS07_05195) ftsX 1151521..1152456 (-) 936 WP_259211602.1 permease-like cell division protein FtsX -
  NRS07_RS05200 (NRS07_05200) - 1152453..1153127 (-) 675 WP_259211603.1 cell division ATP-binding protein FtsE -
  NRS07_RS05205 (NRS07_05205) pilA 1153133..1154266 (-) 1134 WP_259211604.1 signal recognition particle-docking protein FtsY Machinery gene
  NRS07_RS05210 (NRS07_05210) - 1154520..1154720 (+) 201 WP_259211605.1 hypothetical protein -
  NRS07_RS05215 (NRS07_05215) - 1154773..1156476 (-) 1704 WP_259211606.1 thiamine pyrophosphate-binding protein -
  NRS07_RS05225 (NRS07_05225) glpK 1157022..1158536 (+) 1515 WP_259211607.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40368.73 Da        Isoelectric Point: 5.5268

>NTDB_id=722368 NRS07_RS05205 WP_259211604.1 1153133..1154266(-) (pilA) [Massilia sp. H6]
MFSFFKRKKPETQVPEPTVDAAPASAPAPVSPASPPAPAAAAPMFVPGALDARPFAPAPQDIAELFPETAERPTTEQERK
QSWMTRLKAGLSKTSSNLSLLFVGARIDEDLYEELESALLMADAGMDATDFLLSSLRRKVKEDKLVDAAAVKVALKQLMI
ELLMPLQKPLELGRHDPLVMMISGVNGAGKTTTIGKLAKHMQRFDQSVLLAAGDTFRAAAREQLMVWGQRNNVTVISQAS
GDPAAVAFDAVQSGKARGTDVVMVDTAGRLPTQLHLMEELKKIKRVIGKGMEGAPHELLLVIDGNTGQNALAQVKAFDDA
LQLTGLVITKLDGTAKGGVLAAIARTRPVPVYFIGVGEKLDDLQPFDAEEFVEALLG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=722368 NRS07_RS05205 WP_259211604.1 1153133..1154266(-) (pilA) [Massilia sp. H6]
ATGTTTAGTTTCTTCAAAAGAAAGAAGCCGGAGACCCAGGTTCCCGAGCCGACCGTCGACGCCGCGCCCGCTTCCGCTCC
AGCCCCTGTTTCACCAGCATCACCCCCCGCGCCTGCGGCTGCGGCGCCGATGTTCGTGCCCGGCGCGCTCGACGCCCGCC
CGTTCGCCCCTGCCCCGCAGGACATCGCCGAACTGTTCCCGGAAACGGCCGAACGCCCGACCACCGAGCAGGAGCGAAAA
CAGTCCTGGATGACACGCCTGAAGGCCGGGCTGTCCAAGACGTCGAGCAACCTGTCGCTGCTGTTCGTCGGCGCGCGCAT
CGACGAAGACCTGTACGAAGAACTCGAATCGGCGCTGCTGATGGCGGACGCCGGCATGGACGCCACCGACTTTCTGCTGA
GCTCCCTGCGGCGCAAGGTCAAGGAAGACAAGCTGGTCGATGCCGCCGCCGTCAAGGTCGCGCTCAAGCAGCTCATGATC
GAGCTCTTGATGCCGCTGCAAAAGCCGCTCGAGCTCGGCCGCCACGACCCGCTCGTGATGATGATCTCGGGCGTCAACGG
CGCCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGCACATGCAGCGCTTCGACCAGTCGGTACTGCTGGCCGCGGGCG
ATACCTTCCGCGCCGCCGCGCGCGAGCAGCTGATGGTCTGGGGCCAGCGCAACAACGTCACCGTGATCTCGCAAGCCTCG
GGCGACCCGGCCGCCGTGGCGTTCGACGCGGTCCAGTCGGGCAAGGCGCGCGGCACCGACGTGGTCATGGTCGATACGGC
CGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAACTCAAGAAGATCAAGCGCGTGATCGGCAAGGGCATGGAGGGCG
CCCCGCACGAACTGCTCCTGGTCATCGATGGCAACACCGGACAGAACGCGCTGGCGCAGGTCAAGGCCTTCGACGACGCG
CTGCAGCTCACCGGCCTGGTGATCACCAAGCTCGATGGTACCGCCAAGGGCGGCGTGCTGGCCGCGATCGCGCGTACCCG
GCCGGTACCGGTGTATTTCATCGGCGTTGGCGAGAAGCTCGACGACCTGCAGCCTTTCGATGCCGAAGAATTCGTCGAAG
CGCTGCTGGGATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(178-377)

SRP54-type protein, helical bundle domain (SRP54_N)

(104-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.442

100

0.568