Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRS07_RS05435 Genome accession   NZ_CP103371
Coordinates   1201826..1203061 (-) Length   411 a.a.
NCBI ID   WP_259211658.1    Uniprot ID   -
Organism   Massilia sp. H6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196826..1208061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRS07_RS05415 (NRS07_05415) pilD 1197352..1198224 (-) 873 WP_259211652.1 A24 family peptidase Machinery gene
  NRS07_RS05420 (NRS07_05420) - 1198269..1199366 (-) 1098 WP_259211654.1 GlxA family transcriptional regulator -
  NRS07_RS05425 (NRS07_05425) - 1199478..1200275 (+) 798 WP_259211655.1 MBL fold metallo-hydrolase -
  NRS07_RS05430 (NRS07_05430) - 1200426..1201817 (+) 1392 WP_259211656.1 S8 family serine peptidase -
  NRS07_RS05435 (NRS07_05435) pilC 1201826..1203061 (-) 1236 WP_259211658.1 type II secretion system F family protein Machinery gene
  NRS07_RS05440 (NRS07_05440) pilB 1203069..1204832 (-) 1764 WP_259211659.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NRS07_RS05445 (NRS07_05445) - 1205169..1206731 (-) 1563 WP_259211660.1 methyl-accepting chemotaxis protein -
  NRS07_RS05450 (NRS07_05450) - 1206803..1207210 (-) 408 WP_259211661.1 hypothetical protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45021.23 Da        Isoelectric Point: 10.0627

>NTDB_id=722370 NRS07_RS05435 WP_259211658.1 1201826..1203061(-) (pilC) [Massilia sp. H6]
MATSLPSRSRAGAQVKESVYAWEGKDKTGKTVRGELRAGGEAIVNVTLRRQGILVTKIKKKAYRSGKKITDKDLTLFTRQ
LATMMKAGVPLLQAFDIVGKGHGNPSMSKLIMDLRNDVETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLA
IYKEKTLAIKAKIKSALMYPISILAIAFLVTAVIMIWVVPAFKDVFKSFGADLPAPTLIVMAISEFFVTWWYLIFGSIFG
GLYFFFQAWQRSLKMQQAMDRILLRLPIFGAVIRKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYLEATRKIQN
EVSTGTSLTLSMQNVNVFPNMVIQMVQIGEESGSLDAMLGKVADFFEEEVDEAVAGLSSLMEPLIMVILGVLIGGLVIAM
YLPIFKLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=722370 NRS07_RS05435 WP_259211658.1 1201826..1203061(-) (pilC) [Massilia sp. H6]
ATGGCAACCTCCCTACCATCCCGGAGCCGCGCCGGCGCGCAGGTCAAGGAATCGGTCTACGCCTGGGAAGGCAAGGACAA
GACCGGCAAGACCGTGCGCGGCGAACTGCGCGCCGGGGGCGAGGCCATCGTCAACGTCACGCTGCGTCGCCAGGGCATCC
TGGTCACCAAGATCAAGAAAAAGGCCTACCGCAGCGGCAAGAAGATCACCGACAAGGACCTGACCCTGTTCACGCGCCAG
CTGGCCACCATGATGAAGGCCGGCGTACCGCTGCTGCAGGCTTTCGACATCGTCGGCAAGGGCCATGGCAATCCGTCGAT
GTCCAAGCTGATCATGGACCTGCGCAACGACGTCGAGACCGGCACCAGCCTGAACAACGCGTTCCGCAAGTACCCGCTGT
ACTTCGACCCGCTGTTTTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTCACCCGCCTGGCG
ATCTACAAGGAGAAGACGCTGGCGATCAAGGCCAAGATCAAGTCGGCCCTGATGTACCCGATCTCGATCCTCGCGATCGC
CTTCCTGGTCACGGCCGTGATCATGATCTGGGTGGTGCCGGCCTTCAAGGACGTGTTCAAGAGCTTCGGCGCCGACCTGC
CGGCGCCAACCCTGATCGTGATGGCGATCTCGGAATTCTTCGTCACCTGGTGGTACCTGATCTTCGGCTCGATCTTCGGC
GGCCTGTATTTCTTCTTCCAGGCCTGGCAACGCTCGCTCAAGATGCAGCAGGCGATGGACCGCATCCTGCTGCGCCTGCC
GATCTTCGGCGCCGTGATTCGCAAGGCCACCATCGCGCGCTGGACCCGCACCCTGTCGACCATGTTCGCCGCCGGCGTGC
CCCTGGTCGAAGCGCTCGACTCGGTCGGCGGCGCCTCGGGCAACGCGGTCTACCTGGAAGCGACCCGCAAGATCCAGAAC
GAGGTCAGCACCGGCACCAGCCTGACGCTGTCGATGCAGAACGTGAACGTGTTCCCCAACATGGTCATCCAGATGGTCCA
GATCGGCGAAGAATCCGGCTCGCTCGACGCCATGCTGGGCAAGGTGGCCGACTTCTTCGAAGAAGAAGTCGACGAAGCTG
TGGCCGGCCTGTCATCGCTGATGGAGCCGCTGATCATGGTGATCCTGGGCGTGCTGATCGGCGGCCTGGTGATTGCGATG
TATTTGCCGATCTTTAAGCTGGGCTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55

97.324

0.535
  pilC Legionella pneumophila strain ERS1305867

54.545

96.35

0.526
  pilC Acinetobacter baylyi ADP1

53.015

96.837

0.513
  pilG Neisseria gonorrhoeae MS11

52.645

96.594

0.509
  pilG Neisseria meningitidis 44/76-A

52.393

96.594

0.506
  pilC Acinetobacter baumannii D1279779

52.393

96.594

0.506
  pilC Vibrio campbellii strain DS40M4

40.657

96.35

0.392
  pilC Vibrio cholerae strain A1552

39.348

97.08

0.382
  pilC Thermus thermophilus HB27

36.867

100

0.372