Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MRX62_RS06360 Genome accession   NZ_CP104027
Coordinates   1266123..1267166 (-) Length   347 a.a.
NCBI ID   WP_046417698.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261123..1272166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS06350 (MRX62_06335) csrA 1262616..1262831 (-) 216 WP_004085529.1 carbon storage regulator CsrA -
  MRX62_RS06355 (MRX62_06340) alaS 1262970..1265624 (-) 2655 WP_060872260.1 alanine--tRNA ligase -
  MRX62_RS06360 (MRX62_06345) recA 1266123..1267166 (-) 1044 WP_046417698.1 recombinase RecA Machinery gene
  MRX62_RS06365 (MRX62_06350) dinR/lexA 1267348..1267983 (-) 636 WP_023906043.1 transcriptional repressor LexA Regulator
  MRX62_RS06370 (MRX62_06355) - 1268456..1269487 (-) 1032 WP_010892667.1 nitronate monooxygenase family protein -
  MRX62_RS06375 (MRX62_06360) - 1270509..1271537 (+) 1029 WP_010892665.1 right-handed parallel beta-helix repeat-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37582.27 Da        Isoelectric Point: 5.0879

>NTDB_id=626431 MRX62_RS06360 WP_046417698.1 1266123..1267166(-) (recA) [Xylella fastidiosa subsp. pauca strain 50088]
MDENKKRALSVALSQIEKQFGKGSVMRMGDRVIEAVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKKGGTAAFIDAEHALDPIYAGKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDIMVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIEMGVEAKLVEKAGAWYSYGGERIGQGKDNARGYLRENPHLAAKL
EADLREKFEPTELSREEGDEDTLEDTM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=626431 MRX62_RS06360 WP_046417698.1 1266123..1267166(-) (recA) [Xylella fastidiosa subsp. pauca strain 50088]
ATGGATGAGAACAAGAAACGCGCCCTTTCTGTCGCTTTAAGCCAGATTGAAAAACAGTTCGGCAAGGGGTCCGTGATGCG
GATGGGCGATCGCGTGATCGAGGCCGTAGAGGCGATCCCGACAGGTTCGCTCATGTTGGATCTGGCCCTGGGGATTGGTG
GTTTGCCAAAGGGACGTGTCGTGGAAATCTATGGGCCGGAATCTTCTGGGAAGACCACATTGACTTTGCAGGCGATCGCT
CAATGCCAGAAGAAGGGAGGTACAGCAGCGTTCATTGATGCTGAGCATGCCTTGGATCCGATTTATGCGGGCAAGTTAGG
CGTCAATGTTGATGATTTGTTGTTGTCTCAGCCAGATACTGGGGAGCAGGCTCTGGAAATCGCTGACATGCTGGTGCGCT
CGGGGTCGATCGATATCATGGTCATTGATTCGGTTGCGGCACTCACGCCAAAGGCGGAGATTGAGGGTGAGATGGGAGAT
CAGTTGCCCGGTCTTCAGGCGCGCTTGATGAGCCAGGCACTGCGTAAATTGACCGGCAATATCAAGCGCTCTAATACGCT
GGTGATCTTTATCAACCAGTTGCGTATGAAAATTGGGGTCATGATGCCGGGTCAAAGCCCTGAAACTACGACAGGGGGTA
ATGCGCTGAAGTTCTATGCTTCAGTGCGTTTGGATATTCGCCGTATTGGCGCGATCAAGAAGGGGGACGAAATTATCGGG
AATCAAACCAAAATCAAGGTTGTTAAAAACAAGTTGGCGCCTCCCTTCAAACAAGTCGTGACTGAGATTCTCTATGGTGA
AGGCATCAGTCGTGAAGGGGAATTGATTGAGATGGGCGTGGAGGCCAAGTTGGTTGAGAAAGCCGGCGCTTGGTATAGCT
ACGGTGGTGAGCGGATCGGGCAAGGAAAAGATAATGCGCGCGGCTATCTACGTGAAAACCCGCATCTTGCGGCCAAGCTT
GAGGCTGATTTGCGTGAGAAATTTGAGCCGACCGAGCTTTCTCGAGAAGAGGGCGATGAAGATACGCTCGAAGATACAAT
GTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.636

95.101

0.7
  recA Acinetobacter baylyi ADP1

73.171

94.524

0.692
  recA Acinetobacter nosocomialis M2

72.205

95.389

0.689
  recA Acinetobacter baumannii D1279779

72.205

95.389

0.689
  recA Pseudomonas stutzeri DSM 10701

72.256

94.524

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.859

93.948

0.666
  recA Vibrio cholerae strain A1552

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

66.667

98.559

0.657
  recA Neisseria gonorrhoeae strain FA1090

66.667

98.559

0.657
  recA Glaesserella parasuis strain SC1401

68.731

93.084

0.64
  recA Staphylococcus aureus strain ATCC 12600

61.739

99.424

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori strain NCTC11637

62.048

95.677

0.594
  recA Helicobacter pylori 26695

61.446

95.677

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.75

92.219

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

59.184

98.847

0.585
  recA Streptococcus thermophilus LMD-9

57.88

100

0.582
  recA Streptococcus thermophilus LMG 18311

57.88

100

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

93.66

0.582
  recA Streptococcus pneumoniae Rx1

60.366

94.524

0.571
  recA Streptococcus pneumoniae R36A

60.366

94.524

0.571
  recA Streptococcus pneumoniae D39

60.366

94.524

0.571
  recA Streptococcus pneumoniae R6

60.366

94.524

0.571
  recA Streptococcus pneumoniae TIGR4

60.366

94.524

0.571
  recA Streptococcus pyogenes NZ131

59.697

95.101

0.568
  recA Streptococcus mutans UA159

59.394

95.101

0.565
  recA Streptococcus mitis SK321

59.756

94.524

0.565
  recA Streptococcus mitis NCTC 12261

59.451

94.524

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

93.948

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.769

93.66

0.55