Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   MRX62_RS06365 Genome accession   NZ_CP104027
Coordinates   1267348..1267983 (-) Length   211 a.a.
NCBI ID   WP_023906043.1    Uniprot ID   Q9PH24
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1262348..1272983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS06350 (MRX62_06335) csrA 1262616..1262831 (-) 216 WP_004085529.1 carbon storage regulator CsrA -
  MRX62_RS06355 (MRX62_06340) alaS 1262970..1265624 (-) 2655 WP_060872260.1 alanine--tRNA ligase -
  MRX62_RS06360 (MRX62_06345) recA 1266123..1267166 (-) 1044 WP_046417698.1 recombinase RecA Machinery gene
  MRX62_RS06365 (MRX62_06350) dinR/lexA 1267348..1267983 (-) 636 WP_023906043.1 transcriptional repressor LexA Regulator
  MRX62_RS06370 (MRX62_06355) - 1268456..1269487 (-) 1032 WP_010892667.1 nitronate monooxygenase family protein -
  MRX62_RS06375 (MRX62_06360) - 1270509..1271537 (+) 1029 WP_010892665.1 right-handed parallel beta-helix repeat-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23394.81 Da        Isoelectric Point: 6.4966

>NTDB_id=626432 MRX62_RS06365 WP_023906043.1 1267348..1267983(-) (dinR/lexA) [Xylella fastidiosa subsp. pauca strain 50088]
MSLSDIQQAILSLITNHINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPRQARGIRLKHLTEVDETALAL
QSEDVLRLPVLGRVAAGQPIGADIGEGRVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=626432 MRX62_RS06365 WP_023906043.1 1267348..1267983(-) (dinR/lexA) [Xylella fastidiosa subsp. pauca strain 50088]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAACCACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTGTTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTAGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGACTGCGTTAGCTTTG
CAGAGTGAGGATGTGTTGCGCTTGCCAGTGCTCGGCCGTGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGG
TCGCGTGGTGTTGTTGGATCGGGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGACAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGTTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(89-202)

LexA DNA binding domain (LexA_DNA_bind)

(2-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PH24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.799

99.052

0.374