Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BB2000_RS13325 Genome accession   NC_022000
Coordinates   2995932..2996456 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis BB2000     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2990932..3001456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB2000_RS13320 (BB2000_2748) uvrA 2992845..2995679 (-) 2835 WP_020946335.1 excinuclease ABC subunit UvrA -
  BB2000_RS13325 (BB2000_2749) ssb 2995932..2996456 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BB2000_RS18125 - 2996612..2996746 (+) 135 WP_258523355.1 hypothetical protein -
  BB2000_RS18075 - 2996765..2997055 (+) 291 WP_235050587.1 hypothetical protein -
  BB2000_RS13335 (BB2000_2751) - 2997295..2998419 (+) 1125 WP_020946337.1 type IV toxin-antitoxin system AbiEi family antitoxin -
  BB2000_RS18080 (BB2000_2752) - 2998404..2999309 (+) 906 WP_020946338.1 hypothetical protein -
  BB2000_RS13345 (BB2000_2753) zur 2999877..3000407 (+) 531 WP_004245904.1 zinc uptake transcriptional repressor Zur -
  BB2000_RS13350 (BB2000_2754) lexA 3000588..3001199 (-) 612 WP_004245906.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=60929 BB2000_RS13325 WP_004249162.1 2995932..2996456(+) (ssb) [Proteus mirabilis BB2000]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=60929 BB2000_RS13325 WP_004249162.1 2995932..2996456(+) (ssb) [Proteus mirabilis BB2000]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment