Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6J69_RS02135 Genome accession   NZ_AP018777
Coordinates   424001..425065 (+) Length   354 a.a.
NCBI ID   WP_110430958.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419001..430065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS02130 (CHBNIII6_04030) sxy/tfoX 422976..423629 (-) 654 WP_080358974.1 DNA transformation protein TfoX Regulator
  K6J69_RS02135 (CHBNIII6_04040) recA 424001..425065 (+) 1065 WP_110430958.1 recombinase RecA Machinery gene
  K6J69_RS02140 (CHBNIII6_04050) recX 425145..425603 (+) 459 WP_105904808.1 recombination regulator RecX -
  K6J69_RS02145 (CHBNIII6_04060) crcB 425600..425986 (-) 387 WP_053466379.1 fluoride efflux transporter CrcB -
  K6J69_RS02150 (CHBNIII6_04070) - 425986..426804 (-) 819 WP_105881410.1 Cof-type HAD-IIB family hydrolase -
  K6J69_RS02155 (CHBNIII6_04080) - 427219..428223 (+) 1005 WP_021034535.1 ornithine carbamoyltransferase -
  K6J69_RS02160 (CHBNIII6_04090) arcC 428233..429165 (+) 933 WP_110430959.1 carbamate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38174.64 Da        Isoelectric Point: 4.8875

>NTDB_id=59902 K6J69_RS02135 WP_110430958.1 424001..425065(+) (recA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
ESRLRAELVANPEQALMADIEQSENNTELESDFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=59902 K6J69_RS02135 WP_110430958.1 424001..425065(+) (recA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGGCAACTCAAGAAGAAAAACAAAAAGCACTAGCGGCTGCATTAGGGCAAATAGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAATTAGGCGATACTAAAACGTTGGATGTAGAATCTATTTCTACCGGATCACTTGGCTTAGATGTTGCACTGGGAA
TTGGTGGTTTACCTATGGGTCGAATTGTAGAAATCTTCGGACCTGAATCATCTGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCACAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGACCCTATTTATGCAGCAAA
ACTTGGTGTAGATGTAAAAGAACTTTTTGTTTCTCAACCAGATAATGGAGAACAAGCACTTGAAATATGTGATGCATTAG
TTCGTTCTGGCGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGCGATATG
GGGGATTCTCATATGGGTCTGCAAGCGCGTTTAATGTCTCAAGCTTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTCTAGTTGTGTTTATTAACCAAATCCGTATGAAAATAGGTGTAATGTTTGGTAATCCTGAAACCACCACAGGCGGTA
ATGCATTAAAATTCTATTCATCCGTTCGCTTAGATATTCGCCGTACAGGTTCTGTAAAAGACGGGGAAAATATTATAGGA
AATGAAACTCGCGTAAAAGTAGTAAAAAACAAACTAGCAGCTCCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGTGAATTATTAGAACTTGGGGTAAAACACAAACTTGTAGAAAAATCAGGCGCGTGGTATTCCT
ATAATGGCGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAGAAATCAGATGAATTA
GAATCTCGTTTACGTGCGGAATTAGTGGCTAATCCAGAACAAGCCTTAATGGCGGATATTGAACAATCTGAAAATAATAC
TGAATTAGAAAGTGATTTTGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.723

97.74

0.74
  recA Vibrio cholerae strain A1552

73.988

97.74

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.988

97.74

0.723
  recA Pseudomonas stutzeri DSM 10701

75.385

91.808

0.692
  recA Neisseria gonorrhoeae strain FA1090

74.613

91.243

0.681
  recA Neisseria gonorrhoeae MS11

74.613

91.243

0.681
  recA Acinetobacter baylyi ADP1

69.164

98.023

0.678
  recA Acinetobacter nosocomialis M2

71.077

91.808

0.653
  recA Acinetobacter baumannii D1279779

70.769

91.808

0.65
  recA Ralstonia pseudosolanacearum GMI1000

70.846

90.113

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.202

94.915

0.59
  recA Helicobacter pylori 26695

60.588

96.045

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.669

89.548

0.579
  recA Staphylococcus aureus strain ATCC 12600

60.294

96.045

0.579
  recA Helicobacter pylori strain NCTC11637

60

96.045

0.576
  recA Streptococcus pneumoniae Rx1

56.695

99.153

0.562
  recA Streptococcus pneumoniae TIGR4

56.695

99.153

0.562
  recA Streptococcus pneumoniae R6

56.695

99.153

0.562
  recA Streptococcus pneumoniae R36A

56.695

99.153

0.562
  recA Streptococcus pneumoniae D39

56.695

99.153

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

87.006

0.559
  recA Streptococcus mutans UA159

55.932

100

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.373

0.559
  recA Streptococcus thermophilus LMG 18311

54.775

100

0.551
  recA Streptococcus thermophilus LMD-9

54.19

100

0.548
  recA Streptococcus mitis NCTC 12261

58.41

92.373

0.54
  recA Streptococcus mitis SK321

58.104

92.373

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

91.243

0.534
  recA Streptococcus pyogenes NZ131

56.707

92.655

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56

91.808

0.514