Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J69_RS02130 Genome accession   NZ_AP018777
Coordinates   422976..423629 (-) Length   217 a.a.
NCBI ID   WP_080358974.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 417976..428629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS02130 (CHBNIII6_04030) sxy/tfoX 422976..423629 (-) 654 WP_080358974.1 DNA transformation protein TfoX Regulator
  K6J69_RS02135 (CHBNIII6_04040) recA 424001..425065 (+) 1065 WP_110430958.1 recombinase RecA Machinery gene
  K6J69_RS02140 (CHBNIII6_04050) recX 425145..425603 (+) 459 WP_105904808.1 recombination regulator RecX -
  K6J69_RS02145 (CHBNIII6_04060) crcB 425600..425986 (-) 387 WP_053466379.1 fluoride efflux transporter CrcB -
  K6J69_RS02150 (CHBNIII6_04070) - 425986..426804 (-) 819 WP_105881410.1 Cof-type HAD-IIB family hydrolase -
  K6J69_RS02155 (CHBNIII6_04080) - 427219..428223 (+) 1005 WP_021034535.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25161.67 Da        Isoelectric Point: 9.7937

>NTDB_id=59901 K6J69_RS02130 WP_080358974.1 422976..423629(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQIIEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITDVMMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59901 K6J69_RS02130 WP_080358974.1 422976..423629(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTATTGAGCAGAAGCTAGAATGTACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTATGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(19-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.705

100

0.917