Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   BJAB0715_RS17630 Genome accession   NC_021733
Coordinates   3662650..3663123 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB0715     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657650..3668123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS17615 (BJAB0715_03524) pilX 3660279..3661097 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BJAB0715_RS17620 (BJAB0715_03525) pilW 3661094..3662095 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  BJAB0715_RS17625 (BJAB0715_03526) pilV 3662096..3662656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  BJAB0715_RS17630 (BJAB0715_03527) fimU 3662650..3663123 (-) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  BJAB0715_RS17635 (BJAB0715_03528) ispH 3663293..3664243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BJAB0715_RS17640 (BJAB0715_03529) gmk 3664366..3664995 (+) 630 WP_000015937.1 guanylate kinase -
  BJAB0715_RS17645 (BJAB0715_03530) rpoZ 3665068..3665346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BJAB0715_RS20230 - 3665385..3665515 (+) 131 Protein_3462 hypothetical protein -
  BJAB0715_RS17650 (BJAB0715_03531) - 3665555..3667660 (+) 2106 WP_020753492.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=59781 BJAB0715_RS17630 WP_001214068.1 3662650..3663123(-) (fimU) [Acinetobacter baumannii BJAB0715]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=59781 BJAB0715_RS17630 WP_001214068.1 3662650..3663123(-) (fimU) [Acinetobacter baumannii BJAB0715]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment