Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J64_RS02110 Genome accession   NZ_AP018775
Coordinates   410929..411582 (-) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-4 isolate 12H35     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 405929..416582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J64_RS02110 (CHBNIII4_03990) sxy/tfoX 410929..411582 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  K6J64_RS02115 (CHBNIII4_04000) recA 411955..413019 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J64_RS02120 (CHBNIII4_04010) recX 413098..413556 (+) 459 WP_005688257.1 recombination regulator RecX -
  K6J64_RS02125 crcB 413553..413939 (-) 387 WP_005654963.1 fluoride efflux transporter CrcB -
  K6J64_RS02130 (CHBNIII4_04030) - 413939..414757 (-) 819 WP_014551148.1 Cof-type HAD-IIB family hydrolase -
  K6J64_RS02135 (CHBNIII4_04040) - 415160..416164 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=59780 K6J64_RS02110 WP_014551147.1 410929..411582(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59780 K6J64_RS02110 WP_014551147.1 410929..411582(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-4 isolate 12H35]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982

Multiple sequence alignment