Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   BJAB0715_RS17625 Genome accession   NC_021733
Coordinates   3662096..3662656 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii BJAB0715     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657096..3667656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJAB0715_RS17615 (BJAB0715_03524) pilX 3660279..3661097 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BJAB0715_RS17620 (BJAB0715_03525) pilW 3661094..3662095 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  BJAB0715_RS17625 (BJAB0715_03526) pilV 3662096..3662656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  BJAB0715_RS17630 (BJAB0715_03527) fimU 3662650..3663123 (-) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  BJAB0715_RS17635 (BJAB0715_03528) ispH 3663293..3664243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BJAB0715_RS17640 (BJAB0715_03529) gmk 3664366..3664995 (+) 630 WP_000015937.1 guanylate kinase -
  BJAB0715_RS17645 (BJAB0715_03530) rpoZ 3665068..3665346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  BJAB0715_RS20230 - 3665385..3665515 (+) 131 Protein_3462 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=59780 BJAB0715_RS17625 WP_002194578.1 3662096..3662656(-) (pilV) [Acinetobacter baumannii BJAB0715]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=59780 BJAB0715_RS17625 WP_002194578.1 3662096..3662656(-) (pilV) [Acinetobacter baumannii BJAB0715]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414

Multiple sequence alignment