Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WFL_RS05440 Genome accession   NC_017664
Coordinates   1127037..1127666 (+) Length   209 a.a.
NCBI ID   WP_000793791.1    Uniprot ID   -
Organism   Escherichia coli W     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122037..1132666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFL_RS05415 (WFL_05190) ycbZ 1122438..1124198 (-) 1761 WP_000156524.1 Lon protease family protein -
  WFL_RS05420 (WFL_05195) matP 1124384..1124836 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WFL_RS05425 (WFL_05200) ompA 1124912..1125952 (-) 1041 WP_000750416.1 porin OmpA -
  WFL_RS05435 (WFL_05205) sulA 1126309..1126818 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WFL_RS05440 (WFL_05210) sxy/tfoX 1127037..1127666 (+) 630 WP_000793791.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WFL_RS05445 (WFL_05215) yccS 1127629..1129791 (-) 2163 WP_000875023.1 YccS family putative transporter -
  WFL_RS05450 (WFL_05220) yccF 1129801..1130247 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WFL_RS05455 (WFL_05225) helD 1130370..1132424 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=50219 WFL_RS05440 WP_000793791.1 1127037..1127666(+) (sxy/tfoX) [Escherichia coli W]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=50219 WFL_RS05440 WP_000793791.1 1127037..1127666(+) (sxy/tfoX) [Escherichia coli W]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment