Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   RSAU_RS06145 Genome accession   NC_022222
Coordinates   1257543..1258694 (+) Length   383 a.a.
NCBI ID   WP_000020353.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 6850     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1252543..1263694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSAU_RS06115 (RSAU_001162) yfmH 1252779..1254065 (+) 1287 WP_000664781.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RSAU_RS06120 (RSAU_001163) ymfI 1254065..1254769 (+) 705 WP_000646223.1 elongation factor P 5-aminopentanone reductase -
  RSAU_RS06125 (RSAU_001164) - 1254874..1255701 (+) 828 WP_000214892.1 YmfK family protein -
  RSAU_RS06130 (RSAU_001165) - 1255720..1256112 (+) 393 WP_020977202.1 helix-turn-helix domain-containing protein -
  RSAU_RS06135 (RSAU_001166) pgsA 1256146..1256724 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RSAU_RS06145 (RSAU_001167) cinA 1257543..1258694 (+) 1152 WP_000020353.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  RSAU_RS06150 (RSAU_001168) recA 1258859..1259902 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  RSAU_RS06155 (RSAU_001169) rny 1260256..1261815 (+) 1560 WP_001050913.1 ribonuclease Y -
  RSAU_RS06160 (RSAU_001170) - 1262112..1262327 (-) 216 WP_000026308.1 hypothetical protein -
  RSAU_RS06165 (RSAU_001171) - 1262501..1263298 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43225.55 Da        Isoelectric Point: 6.0928

>NTDB_id=50218 RSAU_RS06145 WP_000020353.1 1257543..1258694(+) (cinA) [Staphylococcus aureus subsp. aureus 6850]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVPSAIILLEYDGVVYIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=50218 RSAU_RS06145 WP_000020353.1 1257543..1258694(+) (cinA) [Staphylococcus aureus subsp. aureus 6850]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGAATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGCCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCTATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment