Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | R2866_RS03040 | Genome accession | NC_017451 |
| Coordinates | 600275..600697 (-) | Length | 140 a.a. |
| NCBI ID | WP_005687556.1 | Uniprot ID | A0A377IYS1 |
| Organism | Haemophilus influenzae R2866 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 555218..608397 | 600275..600697 | within | 0 |
Gene organization within MGE regions
Location: 555218..608397
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2866_RS02785 (R2866_0555) | - | 555599..556375 (+) | 777 | WP_005653466.1 | hypothetical protein | - |
| R2866_RS02790 (R2866_0556) | - | 556370..557182 (-) | 813 | WP_005653468.1 | tyrosine-type recombinase/integrase | - |
| R2866_RS02795 (R2866_0557) | mobH | 557273..559180 (-) | 1908 | WP_020910023.1 | MobH family relaxase | - |
| R2866_RS02800 (R2866_0558) | - | 559417..560121 (+) | 705 | WP_020910024.1 | phosphoribosyltransferase | - |
| R2866_RS02805 (R2866_0559) | - | 560437..561135 (-) | 699 | WP_012564949.1 | helix-turn-helix domain-containing protein | - |
| R2866_RS02810 (R2866_0560) | - | 561425..561742 (-) | 318 | WP_012564948.1 | hypothetical protein | - |
| R2866_RS02815 (R2866_0561) | - | 561961..562152 (+) | 192 | WP_005653495.1 | hypothetical protein | - |
| R2866_RS02820 (R2866_0562) | - | 562167..562757 (+) | 591 | WP_020910025.1 | recombinase family protein | - |
| R2866_RS02825 (R2866_0563) | - | 562840..563283 (+) | 444 | WP_020910026.1 | hypothetical protein | - |
| R2866_RS02830 (R2866_0564) | - | 563360..564121 (-) | 762 | WP_020910027.1 | N-6 DNA methylase | - |
| R2866_RS02835 (R2866_0565) | - | 564225..565178 (-) | 954 | WP_020910028.1 | ArdC family protein | - |
| R2866_RS09950 (R2866_0566) | - | 565309..565467 (-) | 159 | WP_005667862.1 | hypothetical protein | - |
| R2866_RS02840 (R2866_0567) | - | 565471..565668 (-) | 198 | WP_015701374.1 | hypothetical protein | - |
| R2866_RS02845 (R2866_0568) | - | 565722..565955 (-) | 234 | WP_005653503.1 | hypothetical protein | - |
| R2866_RS02850 (R2866_0569) | - | 566040..566402 (-) | 363 | WP_020910029.1 | hypothetical protein | - |
| R2866_RS02855 (R2866_0570) | - | 566777..567214 (+) | 438 | WP_020910030.1 | TIGR03757 family integrating conjugative element protein | - |
| R2866_RS02860 (R2866_0571) | - | 567211..568152 (+) | 942 | WP_005687598.1 | TIGR03756 family integrating conjugative element protein | - |
| R2866_RS02865 (R2866_0572) | - | 568167..570167 (+) | 2001 | WP_005687597.1 | integrating conjugative element protein | - |
| R2866_RS02870 (R2866_0573) | - | 570183..570590 (+) | 408 | WP_005667853.1 | hypothetical protein | - |
| R2866_RS02875 | - | 570635..570814 (-) | 180 | WP_005667851.1 | hypothetical protein | - |
| R2866_RS02880 (R2866_0574) | - | 571038..571898 (-) | 861 | WP_000027057.1 | broad-spectrum class A beta-lactamase TEM-1 | - |
| R2866_RS02885 (R2866_0575) | - | 571946..572503 (-) | 558 | WP_001235713.1 | recombinase family protein | - |
| R2866_RS02890 (R2866_0576) | - | 572667..575672 (+) | 3006 | WP_001143760.1 | Tn3-like element Tn3 family transposase | - |
| R2866_RS02895 (R2866_0577) | - | 575830..576159 (+) | 330 | WP_005667844.1 | hypothetical protein | - |
| R2866_RS02900 (R2866_0578) | - | 576215..577708 (-) | 1494 | WP_011271852.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| R2866_RS02905 (R2866_0579) | - | 577717..578040 (-) | 324 | WP_011271851.1 | hypothetical protein | - |
| R2866_RS02910 (R2866_0580) | - | 578050..578493 (-) | 444 | WP_005687593.1 | hypothetical protein | - |
| R2866_RS02915 (R2866_0581) | - | 578465..581335 (-) | 2871 | WP_011271849.1 | conjugative transfer ATPase | - |
| R2866_RS02920 (R2866_0582) | - | 581351..581758 (-) | 408 | WP_011271848.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| R2866_RS02925 (R2866_0583) | - | 581768..583168 (-) | 1401 | WP_011271847.1 | TIGR03752 family integrating conjugative element protein | - |
| R2866_RS02930 (R2866_0584) | - | 583179..584048 (-) | 870 | WP_011271846.1 | TIGR03749 family integrating conjugative element protein | - |
| R2866_RS02935 (R2866_0585) | - | 584048..584692 (-) | 645 | WP_011271845.1 | PFL_4703 family integrating conjugative element protein | - |
| R2866_RS02940 (R2866_0586) | - | 584704..585075 (-) | 372 | WP_011271844.1 | TIGR03750 family conjugal transfer protein | - |
| R2866_RS02945 (R2866_0587) | - | 585095..585496 (-) | 402 | WP_005687585.1 | DUF2976 domain-containing protein | - |
| R2866_RS02950 (R2866_0588) | - | 585516..585761 (-) | 246 | WP_005687584.1 | DUF3262 family protein | - |
| R2866_RS02955 (R2866_0589) | - | 585765..586085 (-) | 321 | WP_005687583.1 | RAQPRD family integrative conjugative element protein | - |
| R2866_RS02960 (R2866_0590) | - | 586246..586932 (-) | 687 | WP_005687582.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| R2866_RS02965 (R2866_0591) | - | 586932..587267 (-) | 336 | WP_005687581.1 | hypothetical protein | - |
| R2866_RS02970 (R2866_0592) | traD | 587251..589500 (-) | 2250 | WP_011271842.1 | type IV conjugative transfer system coupling protein TraD | - |
| R2866_RS02975 (R2866_0593) | - | 589497..590003 (-) | 507 | WP_011271841.1 | integrating conjugative element protein | - |
| R2866_RS02980 (R2866_0594) | - | 590019..590777 (-) | 759 | WP_011271840.1 | transglycosylase SLT domain-containing protein | - |
| R2866_RS02985 (R2866_0595) | - | 590756..591496 (-) | 741 | WP_011271839.1 | TIGR03759 family integrating conjugative element protein | - |
| R2866_RS02990 (R2866_0596) | - | 591500..592129 (-) | 630 | WP_011271838.1 | lipoprotein | - |
| R2866_RS02995 (R2866_0597) | - | 592228..592992 (-) | 765 | WP_011271837.1 | TraX family protein | - |
| R2866_RS09515 (R2866_0598) | - | 593050..593646 (-) | 597 | WP_011271836.1 | hypothetical protein | - |
| R2866_RS03005 (R2866_0599) | radC | 593739..594209 (-) | 471 | WP_011271835.1 | RadC family protein | - |
| R2866_RS03010 (R2866_0600) | - | 594310..594717 (-) | 408 | WP_011271834.1 | hypothetical protein | - |
| R2866_RS03015 (R2866_0601) | - | 594752..595393 (-) | 642 | WP_011271833.1 | DUF3560 domain-containing protein | - |
| R2866_RS03020 (R2866_0602) | - | 595508..595936 (-) | 429 | WP_011271832.1 | STY4534 family ICE replication protein | - |
| R2866_RS03025 (R2866_0603) | - | 596821..598866 (-) | 2046 | WP_014326561.1 | DNA topoisomerase III | - |
| R2866_RS03030 (R2866_0604) | - | 598957..599514 (+) | 558 | WP_011271830.1 | plasmid fertility inhibition factor family protein | - |
| R2866_RS03035 (R2866_0605) | - | 599730..600248 (-) | 519 | WP_005687559.1 | membrane lipoprotein lipid attachment site-containing protein | - |
| R2866_RS03040 (R2866_0606) | ssb | 600275..600697 (-) | 423 | WP_005687556.1 | single-stranded DNA-binding protein | Machinery gene |
| R2866_RS03045 (R2866_0607) | - | 600943..601416 (-) | 474 | WP_005653583.1 | DUF3158 family protein | - |
| R2866_RS03050 (R2866_0608) | - | 601431..602186 (-) | 756 | WP_005667775.1 | PFL_4669 family integrating conjugative element protein | - |
| R2866_RS03060 (R2866_0609) | - | 602447..603670 (-) | 1224 | WP_011271828.1 | STY4528 family pathogenicity island replication protein | - |
| R2866_RS03065 (R2866_0610) | - | 603820..604371 (-) | 552 | WP_005653590.1 | DUF2857 domain-containing protein | - |
| R2866_RS03070 (R2866_0611) | - | 604371..606071 (-) | 1701 | WP_011271827.1 | ParB family protein | - |
| R2866_RS03075 (R2866_0612) | dnaB | 606064..607419 (-) | 1356 | WP_011271826.1 | replicative DNA helicase | - |
| R2866_RS03080 (R2866_0613) | - | 607421..608257 (-) | 837 | WP_011271825.1 | ParA family protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15716.54 Da Isoelectric Point: 5.7558
>NTDB_id=47263 R2866_RS03040 WP_005687556.1 600275..600697(-) (ssb) [Haemophilus influenzae R2866]
MAGINKVIIVGHLGNDPEMRSMPNGEAVANISVATSEAWTDKNTGERREVTEWHRIVFYRKLAEICGQYLKKGAQVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGTRPQSADGANNSQPMPQQDASANAFDDSIPF
MAGINKVIIVGHLGNDPEMRSMPNGEAVANISVATSEAWTDKNTGERREVTEWHRIVFYRKLAEICGQYLKKGAQVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGTRPQSADGANNSQPMPQQDASANAFDDSIPF
Nucleotide
Download Length: 423 bp
>NTDB_id=47263 R2866_RS03040 WP_005687556.1 600275..600697(-) (ssb) [Haemophilus influenzae R2866]
ATGGCTGGAATTAATAAAGTAATTATCGTGGGACATTTAGGTAATGATCCTGAAATGCGAAGCATGCCGAATGGTGAAGC
AGTTGCAAATATCAGTGTAGCAACTAGCGAAGCTTGGACGGATAAAAACACCGGTGAACGTCGTGAAGTGACTGAATGGC
ATCGAATCGTTTTTTATCGCAAATTAGCTGAAATTTGCGGCCAATATCTCAAGAAAGGAGCGCAAGTTTATATTGAAGGA
CGCTTGCGTACTCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTATACCACGGAAATCCAAGGTGATGTAATGCAAAT
GTTAGGTACTCGCCCTCAAAGTGCAGATGGTGCAAATAATTCTCAGCCAATGCCACAACAAGATGCATCGGCAAATGCTT
TTGATGATTCAATACCATTCTGA
ATGGCTGGAATTAATAAAGTAATTATCGTGGGACATTTAGGTAATGATCCTGAAATGCGAAGCATGCCGAATGGTGAAGC
AGTTGCAAATATCAGTGTAGCAACTAGCGAAGCTTGGACGGATAAAAACACCGGTGAACGTCGTGAAGTGACTGAATGGC
ATCGAATCGTTTTTTATCGCAAATTAGCTGAAATTTGCGGCCAATATCTCAAGAAAGGAGCGCAAGTTTATATTGAAGGA
CGCTTGCGTACTCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTATACCACGGAAATCCAAGGTGATGTAATGCAAAT
GTTAGGTACTCGCCCTCAAAGTGCAGATGGTGCAAATAATTCTCAGCCAATGCCACAACAAGATGCATCGGCAAATGCTT
TTGATGATTCAATACCATTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.111 |
100 |
0.721 |
| ssb | Vibrio cholerae strain A1552 |
52.023 |
100 |
0.643 |
| ssb | Neisseria meningitidis MC58 |
59.13 |
82.143 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
59.13 |
82.143 |
0.486 |