Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2866_RS01675 Genome accession   NC_017451
Coordinates   322291..322797 (-) Length   168 a.a.
NCBI ID   WP_005668216.1    Uniprot ID   -
Organism   Haemophilus influenzae R2866     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 317291..327797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS01640 (R2866_0328) hpf 317524..317847 (-) 324 WP_005653397.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R2866_RS01645 (R2866_0329) bamC 318019..318666 (-) 648 WP_005668207.1 outer membrane protein assembly factor BamC -
  R2866_RS01650 (R2866_0330) dapA 318777..319673 (-) 897 WP_005663978.1 4-hydroxy-tetrahydrodipicolinate synthase -
  R2866_RS01655 (R2866_0331) bcp 319774..320241 (+) 468 WP_005668209.1 thioredoxin-dependent thiol peroxidase -
  R2866_RS01660 (R2866_0332) exbB 320410..320862 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  R2866_RS01665 (R2866_0333) exbD 320866..321309 (+) 444 WP_005648853.1 TonB system transport protein ExbD -
  R2866_RS01670 (R2866_0334) - 321319..322113 (+) 795 WP_005653402.1 energy transducer TonB -
  R2866_RS01675 (R2866_0335) ssb 322291..322797 (-) 507 WP_005668216.1 single-stranded DNA-binding protein Machinery gene
  R2866_RS01680 (R2866_0336) uvrA 322951..325782 (+) 2832 WP_005668218.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18811.63 Da        Isoelectric Point: 5.2649

>NTDB_id=47262 R2866_RS01675 WP_005668216.1 322291..322797(-) (ssb) [Haemophilus influenzae R2866]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGYGNDMGGVPQSSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=47262 R2866_RS01675 WP_005668216.1 322291..322797(-) (ssb) [Haemophilus influenzae R2866]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTAGAGGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTATGGTAATGATATGGGCGGTGTGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

54.945

100

0.595
  ssb Neisseria meningitidis MC58

50.867

100

0.524
  ssb Neisseria gonorrhoeae MS11

50.867

100

0.524
  ssb Latilactobacillus sakei subsp. sakei 23K

34.27

100

0.363

Multiple sequence alignment