Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPGAM_RS07235 | Genome accession | NC_017371 |
| Coordinates | 1519139..1519402 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | A0AAV3IH30 |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1514139..1524402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS07215 (HPGAM_07495) | - | 1515049..1516185 (-) | 1137 | WP_000067689.1 | VirB8/TrbF family protein | - |
| HPGAM_RS08990 (HPGAM_07500) | - | 1516178..1516318 (-) | 141 | WP_000789929.1 | hypothetical protein | - |
| HPGAM_RS07225 (HPGAM_07505) | - | 1516315..1518891 (-) | 2577 | WP_000893951.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HPGAM_RS07230 (HPGAM_07510) | - | 1518891..1519127 (-) | 237 | WP_001168536.1 | hypothetical protein | - |
| HPGAM_RS07235 (HPGAM_07515) | comB3 | 1519139..1519402 (-) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| HPGAM_RS07240 (HPGAM_07520) | comB2 | 1519414..1519698 (-) | 285 | WP_000413637.1 | TrbC/VirB2 family protein | Machinery gene |
| HPGAM_RS07245 (HPGAM_07525) | - | 1519686..1520174 (-) | 489 | WP_000571144.1 | hypothetical protein | - |
| HPGAM_RS07250 (HPGAM_07530) | - | 1520167..1520397 (-) | 231 | WP_000189080.1 | hypothetical protein | - |
| HPGAM_RS07255 (HPGAM_07535) | - | 1520400..1521188 (-) | 789 | WP_001140581.1 | hypothetical protein | - |
| HPGAM_RS08580 (HPGAM_07540) | - | 1521166..1521714 (-) | 549 | WP_014536024.1 | restriction endonuclease subunit S | - |
| HPGAM_RS07265 (HPGAM_07545) | purU | 1521756..1522637 (-) | 882 | WP_000889117.1 | formyltetrahydrofolate deformylase | - |
| HPGAM_RS07270 (HPGAM_07550) | sppA | 1522640..1523518 (-) | 879 | WP_000269572.1 | signal peptide peptidase SppA | - |
| HPGAM_RS07275 (HPGAM_07555) | - | 1523589..1523849 (+) | 261 | WP_000752265.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=46944 HPGAM_RS07235 WP_001177718.1 1519139..1519402(-) (comB3) [Helicobacter pylori Gambia94/24]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=46944 HPGAM_RS07235 WP_001177718.1 1519139..1519402(-) (comB3) [Helicobacter pylori Gambia94/24]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |