Detailed information NTG0046943

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPGAM_RS07205
• Genome accession: NC_017371
• Coordinates: 1512192..1513400 (-)
• Length: 402 a.a.
• NCBI ID: WP_000814184.1
• Uniprot ID: A0AAV3IHE5
• Organism: Helicobacter pylori Gambia94/24
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1507192..1518400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPGAM_RS07180 (HPGAM_07460)	-	1507241..1507759 (-)	519	WP_000760578.1	hypothetical protein	-
HPGAM_RS07185 (HPGAM_07465)	-	1507756..1508700 (-)	945	WP_000362468.1	CpaF/VirB11 family protein	-
HPGAM_RS07190 (HPGAM_07470)	-	1508705..1508976 (-)	272	Protein_1405	hypothetical protein	-
HPGAM_RS07195 (HPGAM_07475)	-	1508993..1509955 (-)	963	WP_001095486.1	hypothetical protein	-
HPGAM_RS07200 (HPGAM_07480)	-	1509968..1512208 (-)	2241	WP_000730452.1	hypothetical protein	-
HPGAM_RS07205 (HPGAM_07485)	comB10	1512192..1513400 (-)	1209	WP_000814184.1	DNA type IV secretion system protein ComB10	Machinery gene
HPGAM_RS07210 (HPGAM_07490)	-	1513397..1515052 (-)	1656	WP_000617222.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPGAM_RS07215 (HPGAM_07495)	-	1515049..1516185 (-)	1137	WP_000067689.1	VirB8/TrbF family protein	-
HPGAM_RS08990 (HPGAM_07500)	-	1516178..1516318 (-)	141	WP_000789929.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44949.55 Da
• Isoelectric Point: 9.9914

>NTDB_id=46943 HPGAM_RS07205 WP_000814184.1 1512192..1513400(-) (comB10) [Helicobacter pylori Gambia94/24]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPEMEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLSQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=46943 HPGAM_RS07205 WP_000814184.1 1512192..1513400(-) (comB10) [Helicobacter pylori Gambia94/24]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGATGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGTCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.284	98.01	0.512