Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TTJL18_RS09535 Genome accession   NC_017587
Coordinates   1777051..1778073 (-) Length   340 a.a.
NCBI ID   WP_014630295.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772051..1783073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS09515 (TtJL18_1912) - 1773201..1773842 (-) 642 WP_014630292.1 S4 domain-containing protein -
  TTJL18_RS09520 (TtJL18_1913) fabZ 1773842..1774270 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  TTJL18_RS09525 (TtJL18_1914) - 1774277..1775314 (-) 1038 WP_014630293.1 rod shape-determining protein -
  TTJL18_RS09530 (TtJL18_1915) rny 1775326..1777050 (-) 1725 WP_014630294.1 ribonuclease Y -
  TTJL18_RS09535 (TtJL18_1916) recA 1777051..1778073 (-) 1023 WP_014630295.1 recombinase RecA Machinery gene
  TTJL18_RS09540 (TtJL18_1917) thpR 1778024..1778620 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  TTJL18_RS09545 (TtJL18_1918) cinA 1778617..1779801 (-) 1185 WP_014630296.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TTJL18_RS09550 (TtJL18_1919) - 1779774..1780550 (-) 777 WP_014630297.1 glycine cleavage system protein T -
  TTJL18_RS09555 (TtJL18_1920) - 1780589..1781638 (+) 1050 WP_014630298.1 MFS transporter -
  TTJL18_RS09560 (TtJL18_1921) - 1781631..1782257 (+) 627 WP_014630299.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36341.85 Da        Isoelectric Point: 5.3823

>NTDB_id=39755 TTJL18_RS09535 WP_014630295.1 1777051..1778073(-) (recA) [Thermus thermophilus JL-18]
MDESKRKALENALKAIEKEFGKGAVMRLGEMPKQQVDVIPTGSLALDLALGIGGIPRGRIVEIYGPESGGKTTLALTIIA
QAQRRGGVAAFVDAEHALDPLYAQRLGVQVEDLLVSQPDTGEQALEIVELLARSGAVDVIVVDSVAALVPRAEIEGEMGD
QHVGLQARLMSQALRKLTAVLSKSNTAAIFINQVREKVGITYGNPETTPGGRALKFYASVRLDVRKSGQPIKVGNEAVGV
KVRVKVVKNKLAPPFREAELEIYFGRGLDPVADLVNVAVAAGVIEKAGSWFSYGELRLGQGKEKAAEALRERPELLEEIR
AKVLERAGEVVLAAGEDEGE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=39755 TTJL18_RS09535 WP_014630295.1 1777051..1778073(-) (recA) [Thermus thermophilus JL-18]
ATGGACGAGAGCAAGCGCAAGGCCCTGGAGAACGCCCTGAAGGCGATTGAGAAGGAGTTCGGCAAGGGGGCGGTGATGCG
GCTGGGCGAGATGCCCAAGCAGCAGGTGGACGTGATCCCCACCGGCTCCCTTGCCCTAGACCTCGCCCTGGGGATCGGCG
GCATCCCCCGGGGGCGGATCGTGGAGATCTACGGCCCCGAGTCCGGGGGCAAGACCACCCTCGCCCTCACCATCATCGCC
CAGGCCCAGAGGCGGGGCGGGGTGGCCGCCTTCGTGGACGCGGAGCACGCCCTGGACCCCCTGTACGCCCAGCGCCTCGG
CGTCCAGGTGGAGGATCTCCTGGTCTCCCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGTGGAACTCCTCGCCCGCT
CGGGGGCGGTGGACGTCATCGTGGTGGACTCGGTGGCCGCTTTGGTCCCCCGGGCGGAGATTGAGGGGGAGATGGGGGAC
CAGCACGTGGGCCTCCAGGCGAGGCTTATGAGCCAGGCCCTCCGCAAGCTCACCGCGGTGCTTTCCAAGAGCAACACCGC
CGCCATCTTCATCAACCAGGTGCGGGAGAAGGTGGGGATCACGTACGGCAACCCCGAGACCACCCCGGGGGGGAGGGCGC
TGAAGTTCTACGCCAGCGTGCGCCTGGACGTGCGCAAAAGCGGCCAGCCCATCAAGGTGGGGAACGAGGCCGTGGGCGTC
AAGGTGCGGGTCAAGGTGGTGAAGAACAAGCTCGCCCCCCCCTTCCGCGAGGCGGAGCTGGAGATCTACTTCGGCCGGGG
GCTGGACCCGGTGGCCGACCTGGTGAACGTGGCCGTGGCCGCGGGGGTCATTGAGAAGGCCGGGTCCTGGTTCTCCTACG
GGGAGCTCCGCCTGGGCCAGGGGAAGGAGAAGGCGGCCGAGGCCCTGCGGGAGCGGCCCGAGCTTTTGGAGGAGATCCGC
GCCAAGGTCTTGGAGCGGGCCGGGGAGGTGGTCCTGGCCGCGGGCGAGGACGAGGGGGAGTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.196

96.176

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

100

0.615
  recA Pseudomonas stutzeri DSM 10701

63.415

96.471

0.612
  recA Streptococcus thermophilus LMG 18311

62.162

97.941

0.609
  recA Streptococcus thermophilus LMD-9

62.963

95.294

0.6
  recA Acinetobacter baylyi ADP1

59.012

100

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

62.037

95.294

0.591
  recA Streptococcus mutans UA159

62.037

95.294

0.591
  recA Streptococcus pyogenes NZ131

62.037

95.294

0.591
  recA Staphylococcus aureus strain ATCC 12600

61.28

96.471

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

95.588

0.585
  recA Vibrio cholerae strain A1552

61.231

95.588

0.585
  recA Glaesserella parasuis strain SC1401

58.187

100

0.585
  recA Streptococcus pneumoniae Rx1

60.856

96.176

0.585
  recA Streptococcus pneumoniae R36A

60.856

96.176

0.585
  recA Streptococcus pneumoniae D39

60.856

96.176

0.585
  recA Streptococcus pneumoniae R6

60.856

96.176

0.585
  recA Streptococcus pneumoniae TIGR4

60.856

96.176

0.585
  recA Streptococcus mitis SK321

61.491

94.706

0.582
  recA Streptococcus mitis NCTC 12261

61.491

94.706

0.582
  recA Acinetobacter nosocomialis M2

60.429

95.882

0.579
  recA Acinetobacter baumannii D1279779

60.123

95.882

0.576
  recA Neisseria gonorrhoeae strain FA1090

60.494

95.294

0.576
  recA Neisseria gonorrhoeae MS11

60.494

95.294

0.576
  recA Helicobacter pylori strain NCTC11637

59.574

96.765

0.576
  recA Helicobacter pylori 26695

59.574

96.765

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

94.412

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.443

95

0.565
  recA Ralstonia pseudosolanacearum GMI1000

61.022

92.059

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.364

97.059

0.547

Multiple sequence alignment