Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TTJL18_RS09545 Genome accession   NC_017587
Coordinates   1778617..1779801 (-) Length   394 a.a.
NCBI ID   WP_014630296.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773617..1784801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS09520 (TtJL18_1913) fabZ 1773842..1774270 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  TTJL18_RS09525 (TtJL18_1914) - 1774277..1775314 (-) 1038 WP_014630293.1 rod shape-determining protein -
  TTJL18_RS09530 (TtJL18_1915) rny 1775326..1777050 (-) 1725 WP_014630294.1 ribonuclease Y -
  TTJL18_RS09535 (TtJL18_1916) recA 1777051..1778073 (-) 1023 WP_014630295.1 recombinase RecA Machinery gene
  TTJL18_RS09540 (TtJL18_1917) thpR 1778024..1778620 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  TTJL18_RS09545 (TtJL18_1918) cinA 1778617..1779801 (-) 1185 WP_014630296.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TTJL18_RS09550 (TtJL18_1919) - 1779774..1780550 (-) 777 WP_014630297.1 glycine cleavage system protein T -
  TTJL18_RS09555 (TtJL18_1920) - 1780589..1781638 (+) 1050 WP_014630298.1 MFS transporter -
  TTJL18_RS09560 (TtJL18_1921) - 1781631..1782257 (+) 627 WP_014630299.1 HAD family phosphatase -
  TTJL18_RS09565 (TtJL18_1922) - 1782243..1783328 (-) 1086 WP_014630300.1 enolase C-terminal domain-like protein -
  TTJL18_RS09570 (TtJL18_1923) - 1783346..1784059 (-) 714 WP_014630301.1 hypothetical protein -
  TTJL18_RS09575 (TtJL18_1924) - 1784092..1784589 (+) 498 WP_014630302.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42920.40 Da        Isoelectric Point: 7.0211

>NTDB_id=39756 TTJL18_RS09545 WP_014630296.1 1778617..1779801(-) (cinA) [Thermus thermophilus JL-18]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRTMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPRVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASCFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=39756 TTJL18_RS09545 WP_014630296.1 1778617..1779801(-) (cinA) [Thermus thermophilus JL-18]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGTACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAGCCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGGCGCACCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCTATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAAACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAGGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCTGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCCATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGCGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Competence-damaged protein (CinA)

(248-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.422

100

0.373
  cinA Streptococcus mitis SK321

35.181

100

0.371
  cinA Streptococcus pneumoniae TIGR4

35.181

100

0.371
  cinA Streptococcus pneumoniae R36A

34.94

100

0.368
  cinA Streptococcus pneumoniae Rx1

34.94

100

0.368
  cinA Streptococcus pneumoniae R6

34.94

100

0.368
  cinA Streptococcus pneumoniae D39

34.699

100

0.365

Multiple sequence alignment