Detailed information NTG0039595

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DEIMA_RS04005
• Genome accession: NC_014958
• Coordinates: 880538..881683 (-)
• Length: 381 a.a.
• NCBI ID: WP_148234899.1
• Uniprot ID: -
• Organism: Deinococcus maricopensis DSM 21211
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 875538..886683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIMA_RS03985 (Deima_0785)	-	875549..876103 (-)	555	WP_013555946.1	DUF1003 domain-containing protein	-
DEIMA_RS03990 (Deima_0786)	-	876325..877311 (+)	987	WP_013555947.1	malate dehydrogenase	-
DEIMA_RS17225 (Deima_0787)	-	877362..878264 (-)	903	WP_052303279.1	RNA-splicing ligase RtcB	-
DEIMA_RS17510	-	878342..878773 (-)	432	WP_052303280.1	RtcB family protein	-
DEIMA_RS04000 (Deima_0788)	-	878990..880486 (+)	1497	WP_013555948.1	serine hydrolase	-
DEIMA_RS04005 (Deima_0789)	pilD	880538..881683 (-)	1146	WP_148234899.1	A24 family peptidase	Machinery gene
DEIMA_RS04010 (Deima_0790)	-	881680..882393 (-)	714	WP_013555950.1	HD domain-containing protein	-
DEIMA_RS04015 (Deima_0791)	-	882455..883384 (+)	930	WP_013555951.1	DMT family transporter	-
DEIMA_RS04020 (Deima_0792)	-	883381..884871 (+)	1491	WP_013555952.1	ATP-binding cassette domain-containing protein	-
DEIMA_RS18825 (Deima_0793)	-	885077..885199 (-)	123	WP_013555953.1	hypothetical protein	-
DEIMA_RS04025 (Deima_0794)	-	885306..885821 (-)	516	WP_043816442.1	hypothetical protein	-
DEIMA_RS04030 (Deima_0795)	-	885907..886326 (-)	420	WP_013555955.1	CoA-binding protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 39975.27 Da
• Isoelectric Point: 7.6918

>NTDB_id=39595 DEIMA_RS04005 WP_148234899.1 880538..881683(-) (pilD) [Deinococcus maricopensis DSM 21211]
MTPDAVMAVLAGVLGLLVGSFSNVLIYRLPRRENIAFPPSHCTNCNHQLGALDLVPVFSWLALRGKCRYCGAPIRVRYPL
VELATGALYALMAVVFPFSAVGASLLGLLVLMTLLLVASMIDADTRTIPDSLTLPGAALGLAFAVLNERTGASSAGLPSF
PEALRGMLLGAGVLMLIDLLGSWVLRRFRERQYPDFPIGYQQVALATLVGAWGGVWWGVAAALASTAVNVVARRVVRVPD
LLTLGGLLVSVAVASTGVGPGLILMVQNALAATGAAALIAGAYWWTQPEPADTGDDDAFDASAMGFGDVKLAAVIGAFLG
WEQFLVALVVAVLAGAVLGVVQLAIWRENRLKFGPYLAIGALVALLFGQQLIHAYMNKLGL

Nucleotide

• Length: 1146 bp

>NTDB_id=39595 DEIMA_RS04005 WP_148234899.1 880538..881683(-) (pilD) [Deinococcus maricopensis DSM 21211]
GTGACCCCTGATGCCGTGATGGCTGTGCTTGCGGGCGTGCTGGGCCTGCTGGTCGGCTCGTTCTCGAATGTCCTGATCTA
CCGCCTGCCGCGCCGCGAGAACATCGCGTTCCCGCCGAGCCACTGCACGAATTGCAACCACCAGTTGGGCGCGCTGGACC
TCGTGCCGGTGTTCTCGTGGCTGGCGCTGCGCGGAAAGTGCCGGTACTGCGGCGCGCCCATCCGCGTCCGTTACCCGCTG
GTGGAGCTCGCGACGGGCGCGCTGTACGCCCTGATGGCCGTGGTGTTCCCGTTCTCGGCGGTGGGCGCGAGCCTGCTGGG
CCTGTTGGTGCTGATGACGCTGCTGCTGGTGGCGTCCATGATCGACGCGGACACCCGCACCATCCCCGACAGCTTGACGC
TGCCGGGCGCGGCGCTTGGCCTGGCGTTCGCGGTGCTGAACGAGCGGACCGGCGCGTCCAGCGCGGGCTTGCCGTCTTTC
CCGGAAGCGCTGCGCGGCATGCTGCTCGGCGCGGGCGTGCTGATGCTGATCGACCTGCTGGGCTCGTGGGTGTTGCGCCG
CTTCCGGGAGCGGCAGTACCCGGACTTCCCCATCGGGTATCAGCAGGTGGCGCTCGCCACGCTGGTGGGCGCGTGGGGCG
GCGTGTGGTGGGGCGTGGCGGCGGCACTGGCGTCCACGGCCGTGAATGTCGTCGCGCGGCGCGTCGTGCGCGTGCCGGAC
CTGCTGACGCTGGGGGGGCTGCTGGTGAGCGTCGCGGTGGCGAGCACGGGCGTCGGACCGGGCCTGATCCTGATGGTTCA
GAACGCCCTGGCGGCGACGGGCGCCGCGGCGCTCATCGCGGGCGCGTACTGGTGGACGCAGCCGGAACCGGCCGACACCG
GCGACGACGACGCCTTCGACGCAAGCGCCATGGGGTTCGGTGACGTGAAGCTCGCGGCGGTCATCGGCGCGTTCCTCGGC
TGGGAGCAATTCCTGGTGGCCCTGGTCGTGGCGGTCCTGGCCGGCGCGGTGCTGGGCGTCGTGCAGCTGGCCATCTGGCG
CGAGAATCGCCTGAAGTTCGGGCCGTACCTCGCGATAGGCGCGCTGGTGGCGCTGCTGTTCGGGCAGCAGCTCATTCACG
CGTACATGAACAAGCTGGGCCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

• Type IV leader peptidase family (Peptidase_A24) (109-227)

• Type IV leader peptidase family (Peptidase_A24) (236-340)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.536	100	0.606