Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DEIMA_RS04250 Genome accession   NC_014958
Coordinates   928575..929171 (-) Length   198 a.a.
NCBI ID   WP_013555995.1    Uniprot ID   E8U601
Organism   Deinococcus maricopensis DSM 21211     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 923575..934171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIMA_RS04225 (Deima_0830) - 923646..925565 (+) 1920 WP_013555990.1 ABC transporter ATP-binding protein -
  DEIMA_RS04230 (Deima_0831) - 925562..927409 (+) 1848 WP_013555991.1 ABC transporter ATP-binding protein -
  DEIMA_RS04235 (Deima_0832) - 927492..927812 (-) 321 WP_013555992.1 roadblock/LC7 domain-containing protein -
  DEIMA_RS04240 (Deima_0833) - 927812..928138 (-) 327 WP_013555993.1 roadblock/LC7 domain-containing protein -
  DEIMA_RS04245 (Deima_0834) - 928135..928485 (-) 351 WP_013555994.1 roadblock/LC7 domain-containing protein -
  DEIMA_RS04250 (Deima_0835) recR 928575..929171 (-) 597 WP_013555995.1 recombination mediator RecR Machinery gene
  DEIMA_RS04255 (Deima_0836) - 929304..929603 (-) 300 WP_013555996.1 YbaB/EbfC family nucleoid-associated protein -
  DEIMA_RS04260 (Deima_0837) - 929842..930099 (+) 258 WP_013555997.1 hypothetical protein -
  DEIMA_RS04265 (Deima_0838) - 930636..930872 (+) 237 WP_013555998.1 hypothetical protein -
  DEIMA_RS17230 (Deima_0839) dgt 930881..932215 (+) 1335 WP_013555999.1 dGTP triphosphohydrolase -
  DEIMA_RS04275 (Deima_0841) - 933307..933594 (-) 288 WP_013556001.1 hypothetical protein -
  DEIMA_RS04280 (Deima_0842) - 933707..934138 (-) 432 WP_013556002.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21699.13 Da        Isoelectric Point: 6.4804

>NTDB_id=39596 DEIMA_RS04250 WP_013555995.1 928575..929171(-) (recR) [Deinococcus maricopensis DSM 21211]
MKYPPSLVALIRELSRLPGVGPKSAQRLAFHLFEQPREDTERLASAIMSAKRDLHTCPKCFNITDREFCDVCTDPARDQE
LICVVEEPGDLIAIERSGEYRGLYHVLHGAISPMNGVGPDKLMIKPLLPRVAAGMEVILATSTTVEGEATSLYLQRLLEP
LGATVSRIAYGLPVGGALEYADEVTLGRALTGRQRLTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=39596 DEIMA_RS04250 WP_013555995.1 928575..929171(-) (recR) [Deinococcus maricopensis DSM 21211]
ATGAAGTATCCACCTTCGCTGGTGGCGTTGATCCGCGAACTGTCGCGCCTGCCGGGCGTCGGCCCGAAAAGTGCGCAGCG
GCTCGCGTTCCACCTGTTCGAGCAGCCGCGCGAGGACACCGAGCGGCTGGCGAGCGCCATCATGAGCGCGAAACGCGACC
TGCACACCTGCCCGAAGTGCTTCAACATCACGGACCGGGAGTTCTGTGACGTATGCACGGACCCAGCGCGCGATCAGGAG
CTGATCTGCGTCGTGGAGGAGCCGGGCGACCTGATCGCCATTGAGCGCAGCGGCGAGTACCGCGGGCTGTACCACGTACT
GCACGGCGCGATCAGCCCCATGAACGGCGTCGGGCCGGACAAGCTGATGATCAAGCCGCTGCTGCCGCGCGTGGCAGCGG
GCATGGAGGTCATCCTGGCGACCAGCACGACCGTGGAGGGCGAGGCGACGAGCCTGTACCTGCAGCGCCTGCTGGAGCCG
CTGGGCGCGACCGTGTCGCGCATCGCGTACGGCCTGCCGGTGGGTGGCGCGCTGGAGTACGCGGACGAGGTGACGCTCGG
GCGCGCCCTCACGGGCCGTCAGCGCCTCACCCGCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(82-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E8U601

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

83.333

100

0.833

Multiple sequence alignment