Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NMBNZ0533_RS08020 Genome accession   NC_017518
Coordinates   1505081..1506127 (-) Length   348 a.a.
NCBI ID   WP_002213013.1    Uniprot ID   P0DH59
Organism   Neisseria meningitidis NZ-05/33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1500081..1511127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBNZ0533_RS08005 (NMBNZ0533_1422) dnaX 1501714..1503834 (+) 2121 WP_014581023.1 DNA polymerase III subunit gamma/tau -
  NMBNZ0533_RS08010 (NMBNZ0533_1423) - 1503914..1504249 (+) 336 WP_002219073.1 YbaB/EbfC family nucleoid-associated protein -
  NMBNZ0533_RS08020 (NMBNZ0533_1424) recA 1505081..1506127 (-) 1047 WP_002213013.1 recombinase RecA Machinery gene
  NMBNZ0533_RS08025 (NMBNZ0533_1425) aroD 1506381..1507145 (+) 765 WP_002219072.1 type I 3-dehydroquinate dehydratase -
  NMBNZ0533_RS08030 (NMBNZ0533_1426) rep 1507165..1509180 (+) 2016 WP_014581022.1 DNA helicase Rep -
  NMBNZ0533_RS15970 - 1509311..1509442 (-) 132 WP_255304568.1 hypothetical protein -
  NMBNZ0533_RS08035 (NMBNZ0533_1427) dinB 1509433..1510491 (-) 1059 WP_014581021.1 DNA polymerase IV -
  NMBNZ0533_RS08040 (NMBNZ0533_1428) - 1510634..1511047 (-) 414 Protein_1511 fe(3+)-pyochelin receptor -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37611.86 Da        Isoelectric Point: 4.9003

>NTDB_id=39127 NMBNZ0533_RS08020 WP_002213013.1 1505081..1506127(-) (recA) [Neisseria meningitidis NZ-05/33]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVANEID
AKIRALNGVEMHITEGTQDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=39127 NMBNZ0533_RS08020 WP_002213013.1 1505081..1506127(-) (recA) [Neisseria meningitidis NZ-05/33]
ATGTCAGACGACAAAAGCAAAGCCCTTGCCGCCGCACTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCCCTCGGAGTCG
GCGGTCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCCGAATCCTCCGGCAAAACCACCCTCTGCCTCGAAGCCGTC
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTTGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACACTCGTCC
GTTCGGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCATGTCGGACTGCAGGCGCGCCTGATGAGCCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAACAC
GCTGGTTGTGTTCATCAACCAAATCCGGATGAAGATCGGCGTAATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGCGAAGAGGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCCCCCCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTGATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGCGCGAAAATCGGTCAGGGCAAAGACAACGTCCGCGTCTGGCTGAAGGAAAATCCCGAAGTCGCCAATGAAATCGAC
GCAAAAATCCGCGCCCTCAACGGCGTAGAAATGCACATCACCGAAGGGACGCAGGACGAAACCGACGGCGAACGCCCCGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

99.138

100

0.991
  recA Neisseria gonorrhoeae strain FA1090

99.138

100

0.991
  recA Ralstonia pseudosolanacearum GMI1000

74.772

94.54

0.707
  recA Vibrio cholerae strain A1552

66.949

100

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.949

100

0.681
  recA Glaesserella parasuis strain SC1401

67.236

100

0.678
  recA Pseudomonas stutzeri DSM 10701

71.385

93.391

0.667
  recA Acinetobacter nosocomialis M2

65.812

100

0.664
  recA Acinetobacter baylyi ADP1

66.282

99.713

0.661
  recA Acinetobacter baumannii D1279779

65.517

100

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

94.253

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.809

97.989

0.635
  recA Staphylococcus aureus strain ATCC 12600

64.897

97.414

0.632
  recA Helicobacter pylori 26695

67.077

93.391

0.626
  recA Helicobacter pylori strain NCTC11637

66.769

93.391

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

93.966

0.609
  recA Streptococcus mutans UA159

60.114

100

0.606
  recA Streptococcus pneumoniae R36A

58.974

100

0.595
  recA Streptococcus pneumoniae D39

58.974

100

0.595
  recA Streptococcus pneumoniae TIGR4

58.974

100

0.595
  recA Streptococcus pneumoniae R6

58.974

100

0.595
  recA Streptococcus pneumoniae Rx1

58.974

100

0.595
  recA Streptococcus thermophilus LMG 18311

59.538

99.425

0.592
  recA Streptococcus thermophilus LMD-9

59.538

99.425

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

62.691

93.966

0.589
  recA Streptococcus mitis NCTC 12261

59.302

98.851

0.586
  recA Streptococcus mitis SK321

60.909

94.828

0.578
  recA Streptococcus pyogenes NZ131

61.656

93.678

0.578
  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

93.391

0.56

Multiple sequence alignment