Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5284_RS21390 Genome accession   NZ_CP038856
Coordinates   4474480..4475013 (-) Length   177 a.a.
NCBI ID   WP_096758705.1    Uniprot ID   -
Organism   Citrobacter freundii strain Upstream_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4469480..4480013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5284_RS21380 (E5284_21435) - 4471429..4471710 (+) 282 WP_096758704.1 YjcB family protein -
  E5284_RS21385 (E5284_21440) - 4471792..4474101 (-) 2310 WP_135912726.1 autotransporter outer membrane beta-barrel domain-containing protein -
  E5284_RS21390 (E5284_21445) ssb 4474480..4475013 (-) 534 WP_096758705.1 single-stranded DNA-binding protein SSB1 Machinery gene
  E5284_RS21400 (E5284_21455) uvrA 4475265..4478087 (+) 2823 WP_096758707.1 excinuclease ABC subunit UvrA -
  E5284_RS21405 (E5284_21460) - 4478185..4478541 (-) 357 WP_096758708.1 MmcQ/YjbR family DNA-binding protein -
  E5284_RS21410 (E5284_21465) aphA 4478669..4479382 (-) 714 WP_117343604.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18774.78 Da        Isoelectric Point: 5.2456

>NTDB_id=355918 E5284_RS21390 WP_096758705.1 4474480..4475013(-) (ssb) [Citrobacter freundii strain Upstream_1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQGGWGQPQQPQGGNQFSGGAQSRPQQSAP
AAPSNEPPIDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=355918 E5284_RS21390 WP_096758705.1 4474480..4475013(-) (ssb) [Citrobacter freundii strain Upstream_1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGCAAAGGTTCTCAGGTCTACATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCAGGTGTCGAGAAGTACACGACTGAAGTTGTTGTGAACGTCGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGTGCACCGGCGGGCGGTAATGCAGGTGGCGGTCAACAGGGTG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGTGGTGCACAGTCTCGTCCGCAGCAGTCCGCTCCG
GCAGCGCCGTCTAACGAACCGCCAATCGACTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.757
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.582
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.486
  ssb Neisseria meningitidis MC58

46.486

100

0.486
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.39

Multiple sequence alignment