Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DMB38_RS28125 Genome accession   NZ_CP029618
Coordinates   6411902..6413041 (+) Length   379 a.a.
NCBI ID   WP_047018456.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6406902..6418041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS28110 (DMB38_28100) - 6408571..6409746 (+) 1176 WP_125937486.1 hypothetical protein -
  DMB38_RS28115 (DMB38_28105) - 6409872..6410873 (+) 1002 WP_125937487.1 TAXI family TRAP transporter solute-binding subunit -
  DMB38_RS28120 (DMB38_28110) - 6410927..6411652 (-) 726 WP_125937488.1 class I SAM-dependent methyltransferase -
  DMB38_RS28125 (DMB38_28115) recA 6411902..6413041 (+) 1140 WP_047018456.1 recombinase RecA Machinery gene
  DMB38_RS28130 (DMB38_28120) recX 6413045..6413845 (+) 801 WP_125937489.1 recombination regulator RecX -
  DMB38_RS28135 (DMB38_28125) dinR/lexA 6414241..6415032 (-) 792 WP_125937490.1 transcriptional repressor LexA Regulator
  DMB38_RS28140 (DMB38_28130) nrdR 6415565..6416158 (+) 594 WP_047018459.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 39995.51 Da        Isoelectric Point: 6.6702

>NTDB_id=255156 DMB38_RS28125 WP_047018456.1 6411902..6413041(+) (recA) [Streptomyces sp. WAC 06738]
MAATDREKALDAALAQIERQFGKGAVMRLGERPNEPVEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRAGGTVAFVDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEIADMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTEPVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTHEGDQLGQGKENARTFLKDNPDLADEIE
RRIKEKLGIGPKQESPEGEPGADAAAGPAAPAEGAAPAGKKTVPAPAKTAKAAKAAAKS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=255156 DMB38_RS28125 WP_047018456.1 6411902..6413041(+) (recA) [Streptomyces sp. WAC 06738]
ATGGCAGCGACTGACCGCGAGAAGGCGCTCGACGCCGCACTCGCCCAGATTGAACGGCAATTCGGCAAGGGTGCCGTGAT
GCGCCTCGGCGAGCGGCCGAACGAGCCCGTGGAAGTCATCCCCACCGGGTCGACCGCGCTCGACGTGGCGCTCGGTGTGG
GCGGCCTGCCGCGCGGCCGCGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGCAAGACGACCCTGACGCTGCACGCGGTG
GCCAACGCGCAGCGGGCCGGCGGCACGGTCGCGTTCGTCGACGCGGAGCACGCCCTCGACCCGGAGTATGCGAAGAAGCT
CGGCGTCGACATCGACTCCCTCATCCTCTCCCAGCCCGACAACGGCGAACAGGCGCTGGAGATCGCGGACATGCTCGTCC
GCTCCGGCGCGCTCGACCTGATCGTCATCGACTCGGTCGCGGCCCTCGTGCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACTCCCACGTCGGCCTGCAGGCCCGGCTGATGAGCCAGGCCCTGCGGAAGATCACCAGCGCGCTGAACCAGTCGAAGAC
CACCGCGATCTTCATCAACCAGTTGCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCCGAGACCACCACCGGCGGCAAGG
CGCTGAAGTTCTATGCCTCGGTGCGGCTGGACATCCGGCGCATCGAGACGCTCAAGGACGGCACGGAGCCCGTCGGCAAC
CGCACGCGCGTGAAGGTCGTGAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGGCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCATCCGCAAGTCCGGCGCCTGGTACACGCACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGGACGTTCCTGAAGGACAACCCCGACCTGGCCGACGAGATCGAG
AGGCGGATCAAGGAGAAGCTGGGCATCGGCCCGAAGCAGGAGAGCCCGGAGGGCGAGCCGGGTGCGGACGCGGCCGCCGG
TCCCGCCGCGCCCGCGGAGGGTGCCGCCCCCGCGGGCAAGAAGACGGTGCCGGCGCCGGCCAAGACCGCGAAGGCGGCCA
AGGCCGCGGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.789

90.237

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.533

92.612

0.588
  recA Vibrio cholerae strain A1552

63.533

92.612

0.588
  recA Neisseria gonorrhoeae strain FA1090

67.378

86.544

0.583
  recA Neisseria gonorrhoeae MS11

67.378

86.544

0.583
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.016

0.575
  recA Ralstonia pseudosolanacearum GMI1000

69.206

83.113

0.575
  recA Acinetobacter baumannii D1279779

67.183

85.224

0.573
  recA Acinetobacter nosocomialis M2

66.873

85.224

0.57
  recA Acinetobacter baylyi ADP1

66.873

85.224

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

63.05

89.974

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

86.016

0.567
  recA Streptococcus pyogenes NZ131

62.918

86.807

0.546
  recA Streptococcus mutans UA159

61.128

88.918

0.544
  recA Glaesserella parasuis strain SC1401

62.997

86.28

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

86.807

0.544
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

86.016

0.544
  recA Streptococcus mitis NCTC 12261

60.651

89.182

0.541
  recA Streptococcus mitis SK321

60.355

89.182

0.538
  recA Streptococcus pneumoniae R36A

60.534

88.918

0.538
  recA Streptococcus pneumoniae Rx1

60.534

88.918

0.538
  recA Streptococcus pneumoniae D39

60.534

88.918

0.538
  recA Streptococcus pneumoniae R6

60.534

88.918

0.538
  recA Streptococcus pneumoniae TIGR4

60.534

88.918

0.538
  recA Lactococcus lactis subsp. cremoris KW2

61.702

86.807

0.536
  recA Streptococcus thermophilus LMD-9

61.212

87.071

0.533
  recA Streptococcus thermophilus LMG 18311

61.212

87.071

0.533
  recA Helicobacter pylori strain NCTC11637

61.846

85.752

0.53
  recA Helicobacter pylori 26695

61.846

85.752

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.385

84.96

0.496