Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DMB38_RS28135 Genome accession   NZ_CP029618
Coordinates   6414241..6415032 (-) Length   263 a.a.
NCBI ID   WP_125937490.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6409241..6420032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS28115 (DMB38_28105) - 6409872..6410873 (+) 1002 WP_125937487.1 TAXI family TRAP transporter solute-binding subunit -
  DMB38_RS28120 (DMB38_28110) - 6410927..6411652 (-) 726 WP_125937488.1 class I SAM-dependent methyltransferase -
  DMB38_RS28125 (DMB38_28115) recA 6411902..6413041 (+) 1140 WP_047018456.1 recombinase RecA Machinery gene
  DMB38_RS28130 (DMB38_28120) recX 6413045..6413845 (+) 801 WP_125937489.1 recombination regulator RecX -
  DMB38_RS28135 (DMB38_28125) dinR/lexA 6414241..6415032 (-) 792 WP_125937490.1 transcriptional repressor LexA Regulator
  DMB38_RS28140 (DMB38_28130) nrdR 6415565..6416158 (+) 594 WP_047018459.1 transcriptional regulator NrdR -
  DMB38_RS28145 (DMB38_28135) - 6416307..6419189 (+) 2883 WP_125937491.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28300.07 Da        Isoelectric Point: 6.9855

>NTDB_id=255157 DMB38_RS28135 WP_125937490.1 6414241..6415032(-) (dinR/lexA) [Streptomyces sp. WAC 06738]
MTTTADTTAIAAHERPQQAAEPQLTPPSGDGREGEAQPPKRSMPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGADTPTTQAATDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIDAAICDGDWVAVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=255157 DMB38_RS28135 WP_125937490.1 6414241..6415032(-) (dinR/lexA) [Streptomyces sp. WAC 06738]
GTGACCACTACCGCAGACACCACAGCCATCGCCGCCCACGAACGGCCCCAGCAGGCAGCAGAGCCGCAGCTCACGCCGCC
TTCCGGGGACGGCCGTGAGGGCGAGGCGCAGCCACCCAAGCGCTCCATGCCCGGGCGTCCGCCGGGCATCAGGGCCGACA
GCTCGGGCCTGACCGAGCGGCAGCGCCGCGTCATCGAGGTCATTCGCGACTCGGTGCAGCGCCGCGGCTACCCGCCGTCG
ATGCGCGAGATCGGCCAGGCCGTCGGCCTCTCGTCCACCTCGTCCGTCGCGCACCAGCTCATGGCCCTGGAGCGCAAGGG
CTTCCTCCGCCGGGACCCGCACCGGCCGCGGGCGTACGAGGTGCGCGGCGCGGACACGCCCACCACCCAGGCGGCCACCG
ACACCACGGGCAAGCCCGCCGCGTCGTATGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTGTTCCCGCTGCCCCGGCAGCTCGTCGGCGACGGTGAGCTCTTCGTGCTGAAGGTCGTCGGCGACTC
GATGATCGACGCGGCGATCTGCGACGGGGACTGGGTCGCGGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACAGTGAAGCGCTTCAAGCGCGAGGACGGCCACGTGTGGCTGCTCCCGCACAACGCG
GCGTACCAGCCGATTCCGGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTCCTCCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.479

80.989

0.376