Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C5L38_RS08570 Genome accession   NZ_CP027022
Coordinates   1921354..1922487 (-) Length   377 a.a.
NCBI ID   WP_062751894.1    Uniprot ID   A0ABX6BL56
Organism   Streptomyces sp. WAC00288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916354..1927487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS08550 (C5L38_08550) - 1917505..1919217 (+) 1713 WP_062751892.1 FAD-dependent monooxygenase -
  C5L38_RS08555 (C5L38_08555) - 1919467..1920027 (+) 561 WP_062751893.1 cysteine dioxygenase -
  C5L38_RS08560 (C5L38_08560) - 1920102..1920506 (+) 405 WP_062756836.1 rhodanese-like domain-containing protein -
  C5L38_RS08565 (C5L38_08565) recX 1920783..1921349 (-) 567 WP_030221366.1 recombination regulator RecX -
  C5L38_RS08570 (C5L38_08570) recA 1921354..1922487 (-) 1134 WP_062751894.1 recombinase RecA Machinery gene
  C5L38_RS08575 (C5L38_08575) - 1922864..1923640 (-) 777 WP_062751895.1 SGNH/GDSL hydrolase family protein -
  C5L38_RS08580 (C5L38_08580) - 1923788..1925023 (+) 1236 WP_062751896.1 sensor histidine kinase -
  C5L38_RS08585 (C5L38_08585) vraR 1925064..1925732 (+) 669 WP_062751897.1 response regulator transcription factor Regulator
  C5L38_RS08590 (C5L38_08590) - 1925871..1927175 (+) 1305 WP_062756837.1 cytochrome ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39931.39 Da        Isoelectric Point: 6.1820

>NTDB_id=229859 C5L38_RS08570 WP_062751894.1 1921354..1922487(-) (recA) [Streptomyces sp. WAC00288]
MAGTDREKALDAALAQIERQFGKGAVMRMGDRTQEPIEVISTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEALSAEPGADAAATDATGADDAAKSVPAPAAKTAKATKATAVKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=229859 C5L38_RS08570 WP_062751894.1 1921354..1922487(-) (recA) [Streptomyces sp. WAC00288]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCACTCGCACAGATTGAACGCCAATTCGGCAAGGGCGCCGTGAT
GCGCATGGGCGACCGCACCCAGGAGCCGATCGAGGTGATCTCCACCGGCTCGACCGCCCTGGACGTCGCCCTCGGCGTCG
GCGGACTGCCGCGCGGCCGTGTCGTGGAGATCTACGGACCGGAGTCCTCCGGCAAGACGACCCTGACCCTGCACGCCGTC
GCCAACGCGCAGAAGGCCGGCGGCCAGGTCGCCTTCGTCGACGCCGAGCACGCCCTCGACCCCGAGTACGCCAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGCGAACAGGCCCTCGAGATCGTCGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTGATCGTCATCGACTCCGTCGCCGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGCCTCCAGGCCCGCCTGATGAGCCAGGCCCTCCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGCG
CCCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCATCGAGACCCTCAAGGACGGCACGGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCCCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTCGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTGAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTCCGTCCCGAGGCCCTGTCGGCCGAGCCGGGCGCGGACGCGGCGGCCAC
GGACGCGACCGGCGCGGACGACGCCGCCAAGAGCGTCCCGGCACCCGCGGCCAAGACCGCGAAGGCGACCAAGGCCACCG
CGGTCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.189

92.573

0.613
  recA Neisseria gonorrhoeae strain FA1090

68.712

86.472

0.594
  recA Neisseria gonorrhoeae MS11

68.712

86.472

0.594
  recA Ralstonia pseudosolanacearum GMI1000

70.607

83.024

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.244

91.247

0.586
  recA Vibrio cholerae strain A1552

64.244

91.247

0.586
  recA Acinetobacter baylyi ADP1

68.111

85.676

0.584
  recA Acinetobacter baumannii D1279779

68.111

85.676

0.584
  recA Acinetobacter nosocomialis M2

67.802

85.676

0.581
  recA Staphylococcus aureus strain ATCC 12600

67.178

86.472

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

86.472

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

64.371

88.594

0.57
  recA Helicobacter pylori strain NCTC11637

62.315

89.39

0.557
  recA Helicobacter pylori 26695

62.315

89.39

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

86.472

0.552
  recA Streptococcus mitis NCTC 12261

59.091

93.369

0.552
  recA Streptococcus mutans UA159

62.538

87.798

0.549
  recA Streptococcus pyogenes NZ131

62.727

87.533

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

87.268

0.546
  recA Streptococcus thermophilus LMG 18311

61.934

87.798

0.544
  recA Streptococcus thermophilus LMD-9

61.934

87.798

0.544
  recA Glaesserella parasuis strain SC1401

63.665

85.411

0.544
  recA Streptococcus mitis SK321

61.631

87.798

0.541
  recA Streptococcus pneumoniae R6

61.329

87.798

0.538
  recA Streptococcus pneumoniae R36A

61.329

87.798

0.538
  recA Streptococcus pneumoniae Rx1

61.329

87.798

0.538
  recA Streptococcus pneumoniae D39

61.329

87.798

0.538
  recA Streptococcus pneumoniae TIGR4

61.329

87.798

0.538
  recA Lactococcus lactis subsp. cremoris KW2

61.329

87.798

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

84.881

0.504

Multiple sequence alignment