Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C5L38_RS08585 Genome accession   NZ_CP027022
Coordinates   1925064..1925732 (+) Length   222 a.a.
NCBI ID   WP_062751897.1    Uniprot ID   -
Organism   Streptomyces sp. WAC00288     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920064..1930732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS08560 (C5L38_08560) - 1920102..1920506 (+) 405 WP_062756836.1 rhodanese-like domain-containing protein -
  C5L38_RS08565 (C5L38_08565) recX 1920783..1921349 (-) 567 WP_030221366.1 recombination regulator RecX -
  C5L38_RS08570 (C5L38_08570) recA 1921354..1922487 (-) 1134 WP_062751894.1 recombinase RecA Machinery gene
  C5L38_RS08575 (C5L38_08575) - 1922864..1923640 (-) 777 WP_062751895.1 SGNH/GDSL hydrolase family protein -
  C5L38_RS08580 (C5L38_08580) - 1923788..1925023 (+) 1236 WP_062751896.1 sensor histidine kinase -
  C5L38_RS08585 (C5L38_08585) vraR 1925064..1925732 (+) 669 WP_062751897.1 response regulator transcription factor Regulator
  C5L38_RS08590 (C5L38_08590) - 1925871..1927175 (+) 1305 WP_062756837.1 cytochrome ubiquinol oxidase subunit I -
  C5L38_RS08595 (C5L38_08595) - 1927243..1928022 (+) 780 WP_062751898.1 cytochrome d ubiquinol oxidase subunit II -
  C5L38_RS08600 (C5L38_08600) - 1928056..1929183 (-) 1128 WP_109184908.1 AI-2E family transporter -
  C5L38_RS08605 (C5L38_08605) - 1929481..1929675 (-) 195 WP_030221389.1 DUF3046 domain-containing protein -
  C5L38_RS08610 (C5L38_08610) - 1929755..1930684 (+) 930 WP_062751900.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24150.79 Da        Isoelectric Point: 4.8976

>NTDB_id=229860 C5L38_RS08585 WP_062751897.1 1925064..1925732(+) (vraR) [Streptomyces sp. WAC00288]
MIRVVLADDQTLVRAGFRSILSDEEDIEVVGEAGDGERAIGLARELRPDVVLMDIRMPVLDGLEATRRITADERLEGVRV
VILTTFDADDHVYGALRAGASGFLVKDTEPMELLHAVRVVARGDALISPAVTRRLIAEFAGRAERQPDPNPRLNALTERE
REVLGLVGAGLSNDEIAGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMITPGWLA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=229860 C5L38_RS08585 WP_062751897.1 1925064..1925732(+) (vraR) [Streptomyces sp. WAC00288]
ATGATCCGTGTCGTGCTGGCCGACGACCAGACCCTGGTCCGGGCCGGTTTCCGGTCGATCCTCTCCGACGAGGAGGACAT
CGAGGTCGTCGGGGAGGCCGGCGACGGGGAGCGGGCGATCGGCCTCGCCCGCGAACTGCGCCCGGACGTGGTCCTGATGG
ACATCCGGATGCCGGTGCTCGACGGGCTCGAAGCCACCCGCCGCATCACCGCCGACGAACGGCTCGAAGGGGTCCGGGTG
GTCATCCTGACCACCTTCGACGCGGACGACCACGTGTACGGGGCGCTGCGCGCCGGCGCCTCGGGCTTCCTCGTCAAGGA
CACCGAGCCGATGGAACTGCTGCACGCGGTACGGGTCGTGGCGCGCGGCGACGCCCTGATCTCCCCGGCCGTGACCCGCC
GCCTGATCGCCGAGTTCGCCGGGCGCGCCGAGCGGCAGCCGGACCCGAACCCCCGCCTGAACGCCCTCACCGAGCGGGAG
CGCGAGGTCCTCGGCCTGGTGGGCGCGGGGCTCTCCAACGACGAGATCGCCGGCCGTCTGGTCCTCTCCCCCGCCACCGC
CAAGACCCACGTCAGCCGGATCATGACCAAGCTGGCCGTGCGGGACCGGGCGCAGCTGGTGATCCTGGCGTACGAGTCCG
GGATGATCACGCCGGGCTGGCTGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.326

96.847

0.41
  degU Bacillus subtilis subsp. subtilis str. 168

37.778

100

0.383

Multiple sequence alignment