Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   B2G52_RS08100 Genome accession   NZ_CP019894
Coordinates   1441965..1443710 (-) Length   581 a.a.
NCBI ID   WP_003714121.1    Uniprot ID   A0AAU8VG89
Organism   Neisseria lactamica strain Y92-1009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1436965..1448710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS08080 (B2G52_08080) - 1437447..1437716 (-) 270 WP_003710331.1 HU family DNA-binding protein -
  B2G52_RS08090 (B2G52_08090) lon 1437900..1440350 (-) 2451 WP_003714125.1 endopeptidase La -
  B2G52_RS08095 (B2G52_08095) - 1440834..1441937 (+) 1104 WP_003714123.1 methyltransferase -
  B2G52_RS08100 (B2G52_08100) recD 1441965..1443710 (-) 1746 WP_003714121.1 exodeoxyribonuclease V subunit alpha Machinery gene
  B2G52_RS08105 (B2G52_08105) lolD 1443777..1444472 (-) 696 WP_003714119.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  B2G52_RS08110 (B2G52_08110) - 1444465..1445712 (-) 1248 WP_078835957.1 lipoprotein-releasing ABC transporter permease subunit -
  B2G52_RS08120 (B2G52_08120) - 1445938..1446216 (+) 279 WP_003714116.1 hypothetical protein -
  B2G52_RS08125 (B2G52_08125) recR 1446273..1446890 (-) 618 WP_002237005.1 recombination mediator RecR -
  B2G52_RS08130 (B2G52_08130) - 1446958..1448496 (-) 1539 WP_003714114.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62802.40 Da        Isoelectric Point: 6.1272

>NTDB_id=218739 B2G52_RS08100 WP_003714121.1 1441965..1443710(-) (recD) [Neisseria lactamica strain Y92-1009]
MERQTDEFAQAAARAAIRFLEHYEGSGDEVLANCTERLFQALQNGHSFIRLSGGEAGALPALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINSFDAPETVRRHLLKLEGQTVHRLLKLRPPKMQPAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPALA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRVHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFPDTDG
FKKVAVSCLPDFEPAFALTVHKSQGSEYREVWLLPPSAGGSDDADDALSGLSRGLLYTAITRAREKFVFFGGEEAFRQAA
ATVKARQTALGSILGRVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=218739 B2G52_RS08100 WP_003714121.1 1441965..1443710(-) (recD) [Neisseria lactamica strain Y92-1009]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACACTATGAGGGTTCTGG
CGACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAGAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGGCGCGCTGCCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACATCCGCCCC
CGACGCGGCAGGCGCACGGCAGAACCTCGCAAAATGGTTTCAAGGCGCGGGCAGCGAAGGACAGCGCGATGCCGCCGCCC
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACGACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAGGCAGCGGCACATATGGCACG
CGCGCTGCACCGTGCAATCAACAGTTTTGACGCGCCCGAGACCGTCCGCCGCCATCTGCTTAAATTGGAAGGGCAAACCG
TCCACCGCCTGCTGAAGCTGCGCCCACCCAAAATGCAGCCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGTTGCAACTTTTAAAGGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTTCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGCGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGTGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATATGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTCCCCGATACGGACGGA
TTTAAAAAGGTTGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCTTTCGCGCTGACCGTCCACAAAAGCCAGGGTTCGGA
ATATCGGGAAGTTTGGCTGCTGCCGCCCTCCGCCGGCGGTTCGGACGACGCGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGGGAAAAGTTCGTATTTTTCGGCGGGGAAGAAGCCTTCCGACAAGCCGCC
GCCACCGTCAAAGCGCGTCAGACGGCATTGGGCAGTATACTTGGGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

92.255

100

0.923

Multiple sequence alignment