Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CXR04_RS07540 Genome accession   NZ_CP025407
Coordinates   1795753..1796544 (+) Length   263 a.a.
NCBI ID   WP_101421095.1    Uniprot ID   -
Organism   Streptomyces sp. CMB-StM0423     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790753..1801544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR04_RS07530 (CXR04_07530) - 1791600..1794482 (-) 2883 WP_101421094.1 vitamin B12-dependent ribonucleotide reductase -
  CXR04_RS07535 (CXR04_07535) nrdR 1794631..1795224 (-) 594 WP_047018459.1 transcriptional regulator NrdR -
  CXR04_RS07540 (CXR04_07540) dinR/lexA 1795753..1796544 (+) 792 WP_101421095.1 transcriptional repressor LexA Regulator
  CXR04_RS07545 (CXR04_07545) recX 1796898..1797704 (-) 807 WP_101421096.1 recombination regulator RecX -
  CXR04_RS07550 (CXR04_07550) recA 1797708..1798847 (-) 1140 WP_101421097.1 recombinase RecA Machinery gene
  CXR04_RS07555 (CXR04_07555) - 1799097..1799822 (+) 726 WP_101421098.1 class I SAM-dependent methyltransferase -
  CXR04_RS07560 (CXR04_07560) - 1799874..1800875 (-) 1002 WP_101421099.1 TAXI family TRAP transporter solute-binding subunit -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28314.09 Da        Isoelectric Point: 6.9855

>NTDB_id=218738 CXR04_RS07540 WP_101421095.1 1795753..1796544(+) (dinR/lexA) [Streptomyces sp. CMB-StM0423]
MTTTADTTAIAAHERPQQAAEPQLTPPSGDAREGEAQPPKRSMPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGADTPTTQAATDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIDAAICDGDWVAVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=218738 CXR04_RS07540 WP_101421095.1 1795753..1796544(+) (dinR/lexA) [Streptomyces sp. CMB-StM0423]
GTGACCACTACCGCAGACACCACAGCCATCGCCGCCCACGAACGGCCCCAGCAGGCAGCAGAGCCGCAGCTCACGCCGCC
TTCCGGGGACGCCCGTGAGGGCGAGGCACAGCCACCCAAGCGCTCCATGCCCGGGCGCCCGCCGGGCATCAGGGCCGACA
GCTCGGGCCTGACCGAGCGGCAGCGCCGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGCCGTGGCTACCCGCCGTCG
ATGCGCGAGATCGGCCAGGCCGTCGGCCTCTCGTCCACCTCGTCGGTCGCACACCAGCTCATGGCCCTGGAGCGCAAGGG
CTTCCTGCGCCGGGACCCGCACCGGCCGCGGGCCTACGAGGTGCGCGGTGCGGACACGCCCACCACCCAGGCCGCCACCG
ACACCACGGGCAAGCCCGCCGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTGTTCCCGCTGCCGCGGCAGCTCGTCGGCGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGGGGACTC
GATGATCGACGCGGCGATCTGCGACGGCGACTGGGTCGCGGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTGTGGCTGCTCCCGCACAACGCG
GCGTACCAGCCGATTCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTCCTCCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.479

80.989

0.376

Multiple sequence alignment