Detailed information NTG0020399

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: NCTC11637_00241
• Genome accession: LS483488
• Coordinates: 246706..247842 (+)
• Length: 378 a.a.
• NCBI ID: SQJ02317.1
• Uniprot ID: -
• Organism: Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 241706..252842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCTC11637_00234	panD	242154..242507 (+)	354	SQJ02287.1	aspartate 1-decarboxylase	-
NCTC11637_00235	-	242510..242812 (+)	303	SQJ02288.1	transcriptional regulatory protein	-
NCTC11637_00236	-	242812..243807 (+)	996	SQJ02289.1	Putative periplasmic protein	-
NCTC11637_00237	comB6	243815..244870 (+)	1056	SQJ02291.1	NADH-ubiquinone oxidoreductase subunit	Machinery gene
NCTC11637_00238	comB7	244886..244999 (+)	114	SQJ02314.1	comB7 putative lipoprotein	Machinery gene
NCTC11637_00239	comB8	244996..245733 (+)	738	SQJ02315.1	ComB1 protein	Machinery gene
NCTC11637_00240	comB9	245733..246713 (+)	981	SQJ02316.1	ComB9 competence protein	Machinery gene
NCTC11637_00241	comB10	246706..247842 (+)	1137	SQJ02317.1	ComB10 competence protein	Machinery gene
NCTC11637_00242	manC	247913..249325 (+)	1413	SQJ02318.1	mannose-1-phosphate guanylyltransferase	-
NCTC11637_00243	gmd	249367..250512 (+)	1146	SQJ02319.1	GDP-mannose 4,6-dehydratase	-
NCTC11637_00244	wbcJ	250505..251437 (+)	933	SQJ02320.1	GDP-fucose synthetase	-
NCTC11637_00245	-	251788..252246 (-)	459	SQJ02321.1	Uncharacterised protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42248.81 Da
• Isoelectric Point: 9.9312

>NTDB_id=20399 NCTC11637_00241 SQJ02317.1 246706..247842(+) (comB10) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MNKWLKGVIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPMDLKTNTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=20399 NCTC11637_00241 SQJ02317.1 246706..247842(+) (comB10) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAATAAGTGGCTTAAGGGGGTGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.09	100	0.971