Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A4W88_RS05275 Genome accession   NZ_CP017275
Coordinates   1021352..1022218 (-) Length   288 a.a.
NCBI ID   WP_076632494.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1016352..1027218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS05260 (A4W88_05225) topA 1017587..1019671 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  A4W88_RS05265 (A4W88_05230) - 1019922..1020356 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  A4W88_RS05270 (A4W88_05235) - 1020385..1021251 (-) 867 WP_076632495.1 NAD(P)H-binding protein -
  A4W88_RS05275 (A4W88_05240) dprA 1021352..1022218 (-) 867 WP_076632494.1 DNA-processing protein DprA Machinery gene
  A4W88_RS05280 (A4W88_05245) - 1022273..1023034 (-) 762 WP_076632493.1 ribonuclease HII -
  A4W88_RS05285 (A4W88_05250) ylqF 1023036..1023887 (-) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  A4W88_RS05290 (A4W88_05255) lepB 1024019..1024549 (-) 531 WP_076632492.1 signal peptidase I -
  A4W88_RS05295 (A4W88_05260) - 1024574..1024798 (-) 225 WP_016265150.1 YozE family protein -
  A4W88_RS05300 (A4W88_05265) - 1024809..1025438 (-) 630 WP_076632491.1 YpmS family protein -
  A4W88_RS05305 (A4W88_05270) - 1025451..1026362 (-) 912 WP_231953419.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31831.82 Da        Isoelectric Point: 8.8338

>NTDB_id=197261 A4W88_RS05275 WP_076632494.1 1021352..1022218(-) (dprA) [Latilactobacillus sakei strain TMW 1.1398]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=197261 A4W88_RS05275 WP_076632494.1 1021352..1022218(-) (dprA) [Latilactobacillus sakei strain TMW 1.1398]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.958

100

0.99

Multiple sequence alignment