Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W88_RS05665 Genome accession   NZ_CP017275
Coordinates   1102682..1104853 (-) Length   723 a.a.
NCBI ID   WP_231953420.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1398     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097682..1109853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W88_RS05640 (A4W88_05600) - 1097803..1098750 (-) 948 WP_011374764.1 hypothetical protein -
  A4W88_RS05645 (A4W88_05605) - 1098839..1100557 (-) 1719 WP_076632417.1 ribonuclease J -
  A4W88_RS05650 (A4W88_05610) rpsO 1100786..1101055 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  A4W88_RS05655 (A4W88_05615) rpsT 1101334..1101588 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  A4W88_RS05660 (A4W88_05620) holA 1101657..1102685 (-) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  A4W88_RS05665 (A4W88_05625) comEC 1102682..1104853 (-) 2172 WP_231953420.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4W88_RS05670 (A4W88_05630) - 1104946..1105434 (-) 489 WP_011374770.1 ComE operon protein 2 -
  A4W88_RS05675 (A4W88_05635) comEA 1105492..1106199 (-) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W88_RS05680 (A4W88_05640) - 1106271..1107317 (-) 1047 WP_011374772.1 SepM family pheromone-processing serine protease -
  A4W88_RS05685 (A4W88_05645) coaD 1107319..1107816 (-) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  A4W88_RS05690 (A4W88_05650) rsmD 1107829..1108383 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W88_RS05695 (A4W88_05655) - 1108388..1108678 (-) 291 WP_076632420.1 YlbG family protein -
  A4W88_RS05700 (A4W88_05660) - 1108702..1109790 (-) 1089 WP_076632421.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 81742.78 Da        Isoelectric Point: 10.0984

>NTDB_id=197263 A4W88_RS05665 WP_231953420.1 1102682..1104853(-) (comEC) [Latilactobacillus sakei strain TMW 1.1398]
MAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSVTQPQQPVAQYFKVQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRC
QTFAEKRRWQQVRHPVLFYGEKDFKRIQGATNQNEFDYARFLAQQKRCFYQLTLAKKTTFALRRPSSGLDWLHYWRQTCA
LYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGHLGIIHLLSLSGLHVFYLVQVIRWCATYCRIPREWLNCMLFGLLPV
YALLVGGTTSISRAIALILSRLLCKQLGIRQSRLDSWSLVLLVNLFWQPYLLHSMGGILSYLMAFALIYIGEGSTFKVAY
WLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPIVLGLVIVASVMLPVSNLVVNGCEWLLQLIYKGLGLVVQIPHAMIT
FGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKRTLVSLYLASFLAIHFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLI
DTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDADHIGDLNQILKQIRVDRIICAAGLPQNRQFQR
QIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKPGKGENSDSLVLQAQIGGASWLFTGDLEQEGERAIIERYPQLTVDY
LKVGHHGSKTASDPTVIKKLHLKGALISTGRENRYGHPHQETLTTLQAAKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKD
SEK

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=197263 A4W88_RS05665 WP_231953420.1 1102682..1104853(-) (comEC) [Latilactobacillus sakei strain TMW 1.1398]
TTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTATGCCTTGTTTACGGGGG
CCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAAGTGCAACCCGATGCGA
TTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAAGGCTTATTATCGCTGC
CAAACGTTCGCCGAGAAGCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAAAAGATTTTAAACGTAT
ACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGCTTTTACCAACTGACGT
TAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTGGCGCCAAACGTGCGCA
CTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGCGGGAAGCGCAAGTTGA
CCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCACGTGTTTTATTTAGTGC
AAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATTTGGGCTATTGCCGGTA
TATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGTTACTTTGCAAACAGTT
GGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAGCCTTATTTGCTACATA
GTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCACTTTTAAAGTTGCTTAC
TGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGATAATGATGAATGCCTT
GGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCTGTTAGCAATCTAGTGG
TTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGTTCAAATTCCCCATGCGATGATTACG
TTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATGGCCAGGCAATTAGTAA
TCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATTCATTTTAATCCGACTG
GTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCGGCATCAGCTTTTAATC
GATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGAGCGCAGGTTTCACGAGCGGAAAAAGTAACGGT
TAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCCGATCATATTGGTGATT
TGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAATCGGCAATTTCAAAGA
CAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAGTGGGATCACAAAAATT
TAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCACAAATTGGTGGGGCTA
GCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACAATTAACCGTCGATTAT
TTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACTTAAAAGGCGCATTAAT
CTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCGGCCAAAGTGCCTTATT
GGCTAACGGCGCAGCAGGGGATGTTGACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCAAACAACAATAAAGGAT
AGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(462-670)

Competence protein (Competence)

(177-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.585

100

0.996

Multiple sequence alignment