Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VT48_RS00120 Genome accession   NZ_CP011150
Coordinates   23710..24000 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 18710..29000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS00080 (VT48_00080) - 18743..19072 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  VT48_RS00085 (VT48_00085) - 19085..19525 (+) 441 WP_008341898.1 YaaR family protein -
  VT48_RS00090 (VT48_00090) holB 19537..20526 (+) 990 WP_007496231.1 DNA polymerase III subunit delta' -
  VT48_RS00095 (VT48_00095) - 20529..21356 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  VT48_RS00100 (VT48_00100) yabA 21371..21724 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  VT48_RS00105 (VT48_00105) - 21780..22523 (+) 744 WP_039962495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VT48_RS00110 (VT48_00110) - 22510..22809 (+) 300 WP_046342410.1 GIY-YIG nuclease family protein -
  VT48_RS00115 (VT48_00115) rsmI 22784..23665 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VT48_RS00120 (VT48_00120) abrB 23710..24000 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VT48_RS00125 (VT48_00125) metG 24520..26520 (+) 2001 WP_041506541.1 methionine--tRNA ligase -
  VT48_RS00130 (VT48_00130) - 26602..27369 (+) 768 WP_017359325.1 TatD family hydrolase -
  VT48_RS00135 (VT48_00135) - 27614..28816 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=142806 VT48_RS00120 WP_087975202.1 23710..24000(-) (abrB) [Bacillus altitudinis strain W3]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=142806 VT48_RS00120 WP_087975202.1 23710..24000(-) (abrB) [Bacillus altitudinis strain W3]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment