Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VT48_RS00395 Genome accession   NZ_CP011150
Coordinates   79289..80668 (+) Length   459 a.a.
NCBI ID   WP_017359160.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 74289..85668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS00375 (VT48_00375) - 74631..75095 (+) 465 WP_035391577.1 CtsR family transcriptional regulator -
  VT48_RS00380 (VT48_00380) - 75110..75667 (+) 558 WP_007496258.1 UvrB/UvrC motif-containing protein -
  VT48_RS00385 (VT48_00385) - 75672..76763 (+) 1092 WP_008345444.1 protein arginine kinase -
  VT48_RS00390 (VT48_00390) clpC 76760..79195 (+) 2436 WP_007496263.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  VT48_RS00395 (VT48_00395) radA 79289..80668 (+) 1380 WP_017359160.1 DNA repair protein RadA Machinery gene
  VT48_RS00400 (VT48_00400) disA 80671..81750 (+) 1080 WP_007496267.1 DNA integrity scanning diadenylate cyclase DisA -
  VT48_RS00405 (VT48_00405) - 81904..83004 (+) 1101 WP_003217214.1 PIN/TRAM domain-containing protein -
  VT48_RS00410 (VT48_00410) ispD 83018..83707 (+) 690 WP_008345432.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  VT48_RS00415 (VT48_00415) ispF 83711..84187 (+) 477 WP_007496273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49995.41 Da        Isoelectric Point: 7.1218

>NTDB_id=142808 VT48_RS00395 WP_017359160.1 79289..80668(+) (radA) [Bacillus altitudinis strain W3]
MAKSKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDQNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=142808 VT48_RS00395 WP_017359160.1 79289..80668(+) (radA) [Bacillus altitudinis strain W3]
ATGGCTAAGTCAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCCGGCTG
CGGCACTTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAATCGTCGAAGTGCGTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCACTCGTTCTTATTGGCGGTGATCCAGGGATTGGGAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTATCAGATCAAAATCAGAATGTGTTGTACATATCTGGTGAGGAATCAATCAAACAAA
CGAAGCTTAGGGCAGACCGTCTCGGTATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTTGTGGTCGATTCAATTCAAACCGTTTATCAAAGCGATATCACGTCAGC
TCCTGGATCTGTTTCTCAGGTGAGGGAATGCACTGCCCAGCTGATGAAAATTGCCAAGACGAATGGTATTCCTATTTTTA
TTGTTGGTCATGTGACGAAGGAAGGATCGATTGCTGGGCCGCGCCTTTTAGAGCATATGGTAGATACAGTTCTTTATTTT
GAAGGGGAGCGCCATCATACGTTTCGTATTTTACGGGCAGTGAAAAACCGTTTTGGTTCAACGAATGAATTAGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACAGAGGTATTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCTGTTCTAGTGGAGATACAAGCACTTATTTCACCGACGAGCTTT
GGGAATCCACGGAGAATGGCTACTGGCCTTGATCATAACCGAGTGTCATTGCTTATGGCCGTTTTAGAAAAACGGGTAGG
GCTGCTACTGCAAAACCAAGATGCCTACTTAAAGGTCGCAGGTGGTGTGAAACTTGATGAACCAGCGATAGACTTGGCTA
TTGCCGTTAGTATTGCATCAAGTTTTAAAGATGCAGCGCCGCATCAAGCAGATTGCTTTATAGGAGAAGTGGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAACCGAGAGGGATTGAGTTAGTCGGTGTAGAAAATGTAGCAGAGGCACTTCGTA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.118

99.782

0.869
  radA Streptococcus mitis NCTC 12261

61.81

98.693

0.61
  radA Streptococcus pneumoniae Rx1

61.81

98.693

0.61
  radA Streptococcus pneumoniae D39

61.81

98.693

0.61
  radA Streptococcus pneumoniae R6

61.81

98.693

0.61
  radA Streptococcus pneumoniae TIGR4

61.81

98.693

0.61
  radA Streptococcus mitis SK321

61.81

98.693

0.61

Multiple sequence alignment