Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   DA06_RS22465 Genome accession   NZ_CP180204
Coordinates   4096825..4097010 (+) Length   61 a.a.
NCBI ID   WP_418608174.1    Uniprot ID   -
Organism   Georgenia sp. SUBG003     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4091825..4102010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA06_RS22425 (DA06_022425) - 4092687..4092937 (-) 251 Protein_4417 HisA/HisF-related TIM barrel protein -
  DA06_RS22430 (DA06_022430) - 4092957..4093175 (-) 219 Protein_4418 SDR family NAD(P)-dependent oxidoreductase -
  DA06_RS22435 (DA06_022435) - 4093594..4093881 (-) 288 Protein_4419 B12-binding domain-containing protein -
  DA06_RS22440 (DA06_022440) - 4093951..4094649 (+) 699 WP_418606077.1 urease accessory protein UreD -
  DA06_RS22445 (DA06_022445) - 4095277..4095849 (-) 573 Protein_4421 lyase family protein -
  DA06_RS22450 (DA06_022450) - 4095846..4096025 (-) 180 Protein_4422 FAD-dependent oxidoreductase -
  DA06_RS22455 (DA06_022455) - 4096009..4096389 (-) 381 WP_418606078.1 (2Fe-2S)-binding protein -
  DA06_RS22460 (DA06_022460) - 4096444..4096770 (-) 327 WP_418606079.1 copper transporter -
  DA06_RS22465 (DA06_022465) comEA/comE1 4096825..4097010 (+) 186 WP_418608174.1 ComEA family DNA-binding protein Machinery gene
  DA06_RS22470 (DA06_022470) - 4097256..4097432 (-) 177 Protein_4426 ACT domain-containing protein -
  DA06_RS22475 (DA06_022475) - 4097603..4098025 (+) 423 WP_418606080.1 hypothetical protein -
  DA06_RS22480 (DA06_022480) - 4097922..4098773 (-) 852 WP_418606081.1 energy-coupling factor ABC transporter ATP-binding protein -
  DA06_RS22485 (DA06_022485) - 4099444..4099965 (-) 522 WP_418606082.1 GNAT family N-acetyltransferase -
  DA06_RS22490 (DA06_022490) - 4099949..4100328 (+) 380 Protein_4430 GTP-binding protein -
  DA06_RS22495 (DA06_022495) - 4100517..4101329 (+) 813 WP_418608382.1 hypothetical protein -
  DA06_RS22500 (DA06_022500) - 4101379..4101642 (+) 264 WP_418608383.1 hypothetical protein -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 6473.32 Da        Isoelectric Point: 3.9206

>NTDB_id=1094488 DA06_RS22465 WP_418608174.1 4096825..4097010(+) (comEA/comE1) [Georgenia sp. SUBG003]
MNLNTATAAELDELPGVGPAIAQRILEWRELNGGFGSVEDLDEVSGIGPATLERLRPLVTV

Nucleotide


Download         Length: 186 bp        

>NTDB_id=1094488 DA06_RS22465 WP_418608174.1 4096825..4097010(+) (comEA/comE1) [Georgenia sp. SUBG003]
GTGAACCTCAACACCGCCACGGCGGCCGAGCTCGACGAGCTGCCCGGCGTCGGCCCCGCCATCGCCCAGCGCATCCTGGA
GTGGCGGGAGCTCAACGGCGGCTTCGGCTCGGTGGAGGATCTCGACGAGGTCTCCGGTATCGGCCCCGCCACCCTCGAGC
GGCTGCGTCCCCTGGTGACGGTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

54.839

100

0.557
  comEA Thermus thermophilus HB27

54.237

96.721

0.525
  comE Neisseria gonorrhoeae MS11

50.82

100

0.508
  comE Neisseria gonorrhoeae MS11

50.82

100

0.508
  comE Neisseria gonorrhoeae MS11

50.82

100

0.508
  comE Neisseria gonorrhoeae MS11

50.82

100

0.508
  comEA/celA/cilE Streptococcus pneumoniae R6

49.18

100

0.492
  comEA/celA/cilE Streptococcus mitis SK321

49.18

100

0.492
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.18

100

0.492
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.18

100

0.492
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.18

100

0.492
  comEA/celA/cilE Streptococcus pneumoniae D39

49.18

100

0.492
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.153

96.721

0.475
  comA Synechocystis sp. PCC 6803

48.333

98.361

0.475
  comEA Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.459
  comEA Acinetobacter baylyi ADP1

45.902

100

0.459
  comE1/comEA Haemophilus influenzae Rd KW20

49.123

93.443

0.459
  comEA Streptococcus thermophilus LMD-9

48.214

91.803

0.443
  comEA Lactococcus lactis subsp. cremoris KW2

44.262

100

0.443
  comEA Vibrio cholerae C6706

49.057

86.885

0.426
  comEA Vibrio cholerae strain A1552

49.057

86.885

0.426
  comEA Staphylococcus aureus N315

42.623

100

0.426
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.623

100

0.426
  comEA Staphylococcus aureus MW2

42.623

100

0.426
  comEA Latilactobacillus sakei subsp. sakei 23K

40.984

100

0.41
  comEA Vibrio campbellii strain DS40M4

43.636

90.164

0.393
  comEA Acinetobacter baumannii strain A118

42.593

88.525

0.377
  comEA Legionella pneumophila strain ERS1305867

40.351

93.443

0.377
  comEA Legionella pneumophila str. Paris

40.351

93.443

0.377
  comEA Vibrio parahaemolyticus RIMD 2210633

41.818

90.164

0.377
  comEA Acinetobacter baumannii D1279779

40.741

88.525

0.361

Multiple sequence alignment