Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NTHIC486_RS01960 Genome accession   NZ_CP007471
Coordinates   385189..386253 (+) Length   354 a.a.
NCBI ID   WP_005654959.1    Uniprot ID   A0ABY1VS37
Organism   Haemophilus influenzae strain C486     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 380189..391253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS01955 (NTHIC486_00392) sxy/tfoX 384163..384816 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  NTHIC486_RS01960 (NTHIC486_00393) recA 385189..386253 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  NTHIC486_RS01965 (NTHIC486_00394) recX 386332..386790 (+) 459 WP_005688257.1 recombination regulator RecX -
  NTHIC486_RS01970 (NTHIC486_00395) crcB 386787..387173 (-) 387 WP_005688259.1 fluoride efflux transporter CrcB -
  NTHIC486_RS01975 (NTHIC486_00396) - 387173..387991 (-) 819 WP_005688261.1 Cof-type HAD-IIB family hydrolase -
  NTHIC486_RS01980 (NTHIC486_00397) - 388394..389398 (+) 1005 WP_044345245.1 ornithine carbamoyltransferase -
  NTHIC486_RS01985 (NTHIC486_00398) arcC 389408..390340 (+) 933 WP_044345247.1 carbamate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38132.56 Da        Isoelectric Point: 4.8875

>NTDB_id=104680 NTHIC486_RS01960 WP_005654959.1 385189..386253(+) (recA) [Haemophilus influenzae strain C486]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
EARLRAELVANPEQALMADIEQSENNTESESDFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=104680 NTHIC486_RS01960 WP_005654959.1 385189..386253(+) (recA) [Haemophilus influenzae strain C486]
ATGGCAACTCAAGAAGAAAAACAAAAAGCACTAGCAGCTGCATTAGGGCAAATCGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAATTAGGCGATACCAAAACGTTAGACGTGGAATCTATTTCTACTGGATCACTTGGCTTAGATGTTGCACTAGGAA
TTGGTGGTTTACCTATGGGACGAATTGTAGAAATTTTCGGGCCTGAATCATCGGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCACAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGATCCTATTTATGCAGCAAA
ACTTGGTGTAGATGTAAAAGAACTTTTTGTTTCTCAACCAGATAATGGGGAACAGGCACTTGAAATCTGTGATGCATTAG
TTCGCTCAGGTGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACGCCAAAAGCTGAAATTGAAGGGGATATG
GGCGATTCTCATATGGGTCTGCAAGCACGTTTAATGTCTCAAGCTTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTTTAGTTGTATTTATTAACCAAATCCGAATGAAAATAGGTGTGATGTTTGGTAATCCTGAAACTACTACGGGTGGTA
ATGCATTAAAATTCTATTCTTCTGTTCGCTTAGATATTCGCCGTACAGGTTCTGTAAAAGATGGCGAAAATATTATTGGA
AATGAAACCCGCGTAAAAGTAGTGAAAAACAAATTAGCGGCACCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGTGAATTATTAGAACTTGGTGTAAAACACAAACTTGTAGAAAAATCAGGCGCCTGGTATTCCT
ACAATGGTGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAGAAATCAGATGAATTA
GAAGCTCGTTTACGTGCTGAATTAGTGGCTAATCCAGAACAAGCCTTAATGGCGGATATTGAACAATCTGAAAATAACAC
TGAATCAGAAAGTGATTTTGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.429

98.87

0.746
  recA Vibrio cholerae strain A1552

74.203

97.458

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.203

97.458

0.723
  recA Pseudomonas stutzeri DSM 10701

75.385

91.808

0.692
  recA Neisseria gonorrhoeae MS11

74.923

91.243

0.684
  recA Neisseria gonorrhoeae strain FA1090

74.923

91.243

0.684
  recA Acinetobacter baylyi ADP1

68.768

98.588

0.678
  recA Acinetobacter nosocomialis M2

71.077

91.808

0.653
  recA Acinetobacter baumannii D1279779

70.769

91.808

0.65
  recA Ralstonia pseudosolanacearum GMI1000

70.846

90.113

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

94.915

0.593
  recA Staphylococcus aureus strain ATCC 12600

59.599

98.588

0.588
  recA Helicobacter pylori 26695

60.588

96.045

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.669

89.548

0.579
  recA Helicobacter pylori strain NCTC11637

60

96.045

0.576
  recA Streptococcus pneumoniae D39

56.695

99.153

0.562
  recA Streptococcus pneumoniae R36A

56.695

99.153

0.562
  recA Streptococcus pneumoniae Rx1

56.695

99.153

0.562
  recA Streptococcus pneumoniae R6

56.695

99.153

0.562
  recA Streptococcus pneumoniae TIGR4

56.695

99.153

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

87.006

0.559
  recA Streptococcus mutans UA159

55.932

100

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.373

0.559
  recA Streptococcus thermophilus LMG 18311

54.775

100

0.551
  recA Streptococcus mitis NCTC 12261

58.41

92.373

0.54
  recA Streptococcus mitis SK321

58.104

92.373

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

91.243

0.534
  recA Streptococcus thermophilus LMD-9

57.492

92.373

0.531
  recA Streptococcus pyogenes NZ131

56.707

92.655

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56

91.808

0.514

Multiple sequence alignment