Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NTHIC486_RS01955 Genome accession   NZ_CP007471
Coordinates   384163..384816 (-) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   -
Organism   Haemophilus influenzae strain C486     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 379163..389816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHIC486_RS01955 (NTHIC486_00392) sxy/tfoX 384163..384816 (-) 654 WP_014551147.1 DNA transformation protein TfoX Regulator
  NTHIC486_RS01960 (NTHIC486_00393) recA 385189..386253 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  NTHIC486_RS01965 (NTHIC486_00394) recX 386332..386790 (+) 459 WP_005688257.1 recombination regulator RecX -
  NTHIC486_RS01970 (NTHIC486_00395) crcB 386787..387173 (-) 387 WP_005688259.1 fluoride efflux transporter CrcB -
  NTHIC486_RS01975 (NTHIC486_00396) - 387173..387991 (-) 819 WP_005688261.1 Cof-type HAD-IIB family hydrolase -
  NTHIC486_RS01980 (NTHIC486_00397) - 388394..389398 (+) 1005 WP_044345245.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=104679 NTHIC486_RS01955 WP_014551147.1 384163..384816(-) (sxy/tfoX) [Haemophilus influenzae strain C486]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=104679 NTHIC486_RS01955 WP_014551147.1 384163..384816(-) (sxy/tfoX) [Haemophilus influenzae strain C486]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982