Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABKP85_RS00930 Genome accession   NZ_CP157379
Coordinates   163997..164785 (+) Length   262 a.a.
NCBI ID   WP_011834262.1    Uniprot ID   A0A0M2ZTB8
Organism   Lactococcus cremoris strain NZ3900     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 158997..169785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP85_RS00905 (ABKP85_00905) - 159309..160094 (+) 786 WP_011834259.1 DNA/RNA non-specific endonuclease -
  ABKP85_RS00910 (ABKP85_00910) - 160263..160472 (+) 210 WP_014571884.1 hypothetical protein -
  ABKP85_RS00915 (ABKP85_00915) - 160484..160723 (+) 240 WP_011675217.1 hypothetical protein -
  ABKP85_RS00920 (ABKP85_00920) - 160921..162501 (+) 1581 WP_011834260.1 glycosyl transferase -
  ABKP85_RS00925 (ABKP85_00925) - 162630..163844 (+) 1215 WP_011834261.1 pyridoxal phosphate-dependent aminotransferase -
  ABKP85_RS00930 (ABKP85_00930) codY 163997..164785 (+) 789 WP_011834262.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABKP85_RS00935 (ABKP85_00935) gatC 165063..165368 (+) 306 WP_011834264.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ABKP85_RS00940 (ABKP85_00940) gatA 165368..166828 (+) 1461 WP_011834265.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ABKP85_RS00945 (ABKP85_00945) gatB 166853..168286 (+) 1434 WP_011834266.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29158.48 Da        Isoelectric Point: 4.5254

>NTDB_id=1006437 ABKP85_RS00930 WP_011834262.1 163997..164785(+) (codY) [Lactococcus cremoris strain NZ3900]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLSDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1006437 ABKP85_RS00930 WP_011834262.1 163997..164785(+) (codY) [Lactococcus cremoris strain NZ3900]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATACAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAACGCCTGCGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTACAATACAAACAATGATCGCGTTGACCAATTTTTCTACGATCGTAAATTGCCTGACGAATACGTT
CGTGCAGCAGTACGTATTTACGATACAATGGCAAACGTTCCTGTTGATCGTCCTTTAGCAATTTTCCCAGAAGAAAGTCT
TAGCGATTTTCCAAAAGGTGTAACAACTTTAGCGCCTATCTATGGTTCTGGAATGCGTCTTGGAACATTTATTATGTGGC
GTGAAGATGGTGAATTTACAGATGACGATCTTGTTTTGGTTGAGCTTGCAACAACAGTAATCGGTGTACAACTCTCAAAC
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACTATGGCAACAATGGCTGTTAATACACTTTCTTACTCAGA
AATGAAAGCTGTCAAAGCAATTATTGAAGAACTTGATGGTGAAGAAGGGCATGTTATTGCCTCTGTCATTGCTGACAAGA
TTGGTATTACACGTTCAGTGATTGTTAATGCTTTACGTAAACTTGAATCTGCTGGTGTTATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTGTTTGATAAACTTGCTGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZTB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

99.618

100

0.996
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462

Multiple sequence alignment