Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FQT45_RS10105 Genome accession   NZ_LR595858
Coordinates   2055459..2056052 (-) Length   197 a.a.
NCBI ID   WP_077323215.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050459..2061052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS10075 (NCTC10228_02077) ruvX 2050697..2051116 (-) 420 WP_077323211.1 Holliday junction resolvase RuvX -
  FQT45_RS10080 (NCTC10228_02078) - 2051113..2051382 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FQT45_RS10085 (NCTC10228_02079) spx 2051494..2051892 (-) 399 WP_007893913.1 transcriptional regulator Spx -
  FQT45_RS10090 (NCTC10228_02080) recA 2052291..2053433 (-) 1143 WP_077323212.1 recombinase RecA Machinery gene
  FQT45_RS10095 (NCTC10228_02081) cinA 2053523..2054782 (-) 1260 WP_077323213.1 competence/damage-inducible protein A Machinery gene
  FQT45_RS10100 (NCTC10228_02082) - 2054898..2055452 (-) 555 WP_077323214.1 DNA-3-methyladenine glycosylase I -
  FQT45_RS10105 (NCTC10228_02083) ruvA 2055459..2056052 (-) 594 WP_077323215.1 Holliday junction branch migration protein RuvA Machinery gene
  FQT45_RS10110 (NCTC10228_02084) - 2056054..2057276 (-) 1223 Protein_1944 MFS transporter -
  FQT45_RS10115 (NCTC10228_02086) hexB 2057287..2059254 (-) 1968 WP_077323216.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21998.32 Da        Isoelectric Point: 6.1062

>NTDB_id=1006439 FQT45_RS10105 WP_077323215.1 2055459..2056052(-) (ruvA) [Streptococcus pseudoporcinus strain NCTC10228]
MFDYIKGQLTKITAKYIVVETNGLGYIIYVANPYSFTDSVNQNVTVYLHQVIREDAHLLFGFHTDDEKDVFLKLISVSGI
GPMTALAIVAVDDNQGLVTAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVDNPEPGQQQSQAKRNSNHQLDEAIEALL
ALGYKATELKKIRAFFEGTEETAEQYIKSALKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1006439 FQT45_RS10105 WP_077323215.1 2055459..2056052(-) (ruvA) [Streptococcus pseudoporcinus strain NCTC10228]
ATGTTTGACTATATTAAAGGGCAATTAACAAAAATTACTGCTAAATATATTGTTGTAGAAACAAATGGTCTAGGTTATAT
TATCTATGTGGCTAACCCTTATAGCTTTACAGATAGTGTCAACCAAAATGTGACTGTTTATCTGCATCAAGTGATTAGAG
AAGATGCTCATCTTTTATTTGGCTTTCATACGGATGATGAAAAGGATGTTTTTTTAAAACTCATTTCTGTTTCGGGTATT
GGTCCGATGACTGCTTTAGCTATTGTTGCTGTGGACGATAACCAGGGCTTGGTTACAGCTATTGACAATAGTGATATTAA
GTACTTAATGAAGTTCCCTAAAATTGGGAAAAAGACGGCACAGCAGATGATTCTAGACCTTGCTGGCAAGTTTGTGGACA
ATCCGGAGCCTGGCCAGCAGCAGAGCCAAGCTAAGCGAAATAGTAATCACCAGCTTGACGAAGCTATCGAGGCCCTCTTA
GCGCTAGGCTATAAAGCAACAGAGTTGAAGAAGATTAGGGCTTTCTTTGAAGGGACAGAGGAAACGGCTGAGCAGTATAT
CAAGTCAGCTTTGAAAATGTTAATGAAGGGGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.5

100

0.665
  ruvA Streptococcus pneumoniae R6

65.657

100

0.66
  ruvA Streptococcus pneumoniae D39

65.657

100

0.66
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426